Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01998 and EFB2_01999 overlap by 1 nucleotidesEFB2_01999 and EFB2_02000 are separated by 2 nucleotidesEFB2_02000 and EFB2_02001 overlap by 4 nucleotidesEFB2_02001 and EFB2_02002 are separated by 4 nucleotides EFB2_01998: EFB2_01998 - Flagellar biosynthetic protein FliP, at 2,157,571 to 2,158,308 _01998 EFB2_01999: EFB2_01999 - Flagellar protein FliO, at 2,158,308 to 2,158,673 _01999 EFB2_02000: EFB2_02000 - Flagellar motor switch protein FliN, at 2,158,676 to 2,159,089 _02000 EFB2_02001: EFB2_02001 - Flagellar motor switch protein FliM, at 2,159,086 to 2,160,090 _02001 EFB2_02002: EFB2_02002 - hypothetical protein, at 2,160,095 to 2,160,559 _02002
Group Condition EFB2_01998 EFB2_01999 EFB2_02000 EFB2_02001 EFB2_02002
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -1.3 +0.0 -0.4 -0.8
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.4 -0.1 -1.2 -0.2 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.6 -0.8 +0.4 -0.5 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.2 -0.5 -0.5 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.3 -1.0 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.8 -0.4 -0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -1.1 +0.2 -0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.2 -0.4 -0.0 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.3 -0.8 -0.2 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 +0.2 -0.4 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.5 +0.3 -0.1 -0.1
no phage control BHIS_CaCl2 no phage control -0.2 -0.7 +0.3 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.3 +0.2 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 +0.1 -0.1 +0.3 -0.4
mixed community no phage control BHIS no phage control with 14 member community -0.4 +0.2 -0.4 -0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.0 -0.7 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.5 +0.4 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.1 +0.3 +0.2 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.3 -0.3 +0.3 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.5 +0.2 +0.5 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.3 +0.3 -0.3 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.5 -0.0 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 +0.1 -0.0 +0.6 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.3 +0.1 +0.2 -0.3
mixed community no phage control BHIS no phage control with 14 member community +0.0 +0.6 +0.2 -0.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.3 +0.1 +0.2 -0.2
mixed community no phage control BHIS no phage control with 14 member community -0.2 +0.2 +0.7 -0.2 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.2 +0.1 -0.2 +0.5
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.0 +0.5 +0.4 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.4 +0.3 +0.1 +0.4 +0.1
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EFB2_01998
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EFB2_01999
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EFB2_02001
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EFB2_02002
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