Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01985 and EFB2_01986 are separated by 66 nucleotidesEFB2_01986 and EFB2_01987 overlap by 20 nucleotidesEFB2_01987 and EFB2_01988 overlap by 12 nucleotidesEFB2_01988 and EFB2_01989 are separated by 172 nucleotides EFB2_01985: EFB2_01985 - putative protein YedJ, at 2,147,097 to 2,147,792 _01985 EFB2_01986: EFB2_01986 - DNA-cytosine methyltransferase, at 2,147,859 to 2,149,277 _01986 EFB2_01987: EFB2_01987 - Very short patch repair protein, at 2,149,258 to 2,149,728 _01987 EFB2_01988: EFB2_01988 - putative inner membrane transporter YedA, at 2,149,717 to 2,150,637 _01988 EFB2_01989: EFB2_01989 - Inner membrane protein YedI, at 2,150,810 to 2,151,727 _01989
Group Condition EFB2_01985 EFB2_01986 EFB2_01987 EFB2_01988 EFB2_01989
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.6 +0.1 -0.5 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.3 -0.2 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.5 +0.1 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -0.4 -0.1 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 -0.3 +0.4 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 +0.2 -0.2 +0.1 +0.0
no phage control BHIS_CaCl2 no phage control -0.5 -0.6 +0.8 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 -0.1 -0.1 -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.4 -0.6 +0.5 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.4 +0.2 -0.2 -0.0 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.5 +0.3 -0.4 +0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 -0.3 -0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.7 +0.3 +0.0 +0.0 +0.2
no phage control BHIS no phage control -0.4 +0.2 +0.1 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 -0.3 +0.3 +0.0 +0.1
mixed community no phage control BHIS no phage control with 14 member community -0.2 +0.0 +0.4 -0.2 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.2 +0.4 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.3 +0.3 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.3 -0.1 +0.2 -0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.2 +0.4 -0.1 -0.1
no phage control BHIS no phage control -0.3 -0.1 +0.5 -0.0 +0.1
no phage control BHIS no phage control -0.1 +0.2 +0.2 +0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 +0.1 -0.1 +0.2 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.4 +0.3 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.0 +0.6 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.3 -0.1 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.6 +0.1 -0.2 +0.2 -0.2
mixed community no phage control BHIS no phage control with 14 member community +0.3 +0.0 +0.5 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.6 -0.3 +0.5 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.6 -0.4 +0.4 +0.0 +0.5
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