Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01976 and EFB2_01977 are separated by 847 nucleotidesEFB2_01977 and EFB2_01978 are separated by 257 nucleotidesEFB2_01978 and EFB2_01979 are separated by 0 nucleotidesEFB2_01979 and EFB2_01980 are separated by 108 nucleotides EFB2_01976: EFB2_01976 - Prophage integrase IntA, at 2,136,213 to 2,137,433 _01976 EFB2_01977: EFB2_01977 - Metal-binding protein ZinT, at 2,138,281 to 2,138,931 _01977 EFB2_01978: EFB2_01978 - Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 2,139,189 to 2,139,824 _01978 EFB2_01979: EFB2_01979 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 2,139,825 to 2,140,829 _01979 EFB2_01980: EFB2_01980 - 5-hydroxyisourate hydrolase, at 2,140,938 to 2,141,351 _01980
Group Condition EFB2_01976 EFB2_01977 EFB2_01978 EFB2_01979 EFB2_01980
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -1.4 +0.1 -0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -1.0 -0.0 -0.0 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -1.7 +0.2 +0.0 +0.2
no phage control BHIS no phage control -0.2 -0.4 -0.0 -0.0 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.6 +0.0 -0.2 -0.4
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.4 +0.0 -0.1 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -1.3 +0.0 +0.0 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.2 -0.5 -0.1 -0.3
mixed community no phage control BHIS no phage control with 14 member community -0.2 -0.5 -0.0 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.4 -0.2 +0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.2 +0.0 +0.2 -0.9
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.4 +0.2 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 +0.5 -0.1 -0.2 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.4 -0.4 +0.0 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.1 -0.2 -0.5 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.7 +0.1 -0.1 +0.6
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.5 +0.2 +0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.4 +0.1 +0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.2 +0.1 +0.2 -0.3
no phage control BHIS_CaCl2 no phage control +0.2 -0.7 +0.4 +0.4 -0.0
mixed community no phage control BHIS no phage control with 14 member community -0.2 +0.5 -0.2 -0.1 +0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.2 +0.5 -0.2 -0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.3 +0.1 +0.3 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.3 -0.2 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.5 -0.3 -0.0 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.6 -0.3 +0.1 +0.0
no phage control BHIS_CaCl2 no phage control +0.0 +0.4 -0.1 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.6 -0.0 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 +0.2 -0.0 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.9 +0.1 +0.0 +0.1
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