Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01951 and EFB2_01952 are separated by 216 nucleotidesEFB2_01952 and EFB2_01953 are separated by 81 nucleotidesEFB2_01953 and EFB2_01954 are separated by 52 nucleotidesEFB2_01954 and EFB2_01955 are separated by 72 nucleotides EFB2_01951: EFB2_01951 - hypothetical protein, at 2,115,382 to 2,116,218 _01951 EFB2_01952: EFB2_01952 - hypothetical protein, at 2,116,435 to 2,116,653 _01952 EFB2_01953: EFB2_01953 - hypothetical protein, at 2,116,735 to 2,117,025 _01953 EFB2_01954: EFB2_01954 - hypothetical protein, at 2,117,078 to 2,117,374 _01954 EFB2_01955: EFB2_01955 - hypothetical protein, at 2,117,447 to 2,117,689 _01955
Group Condition EFB2_01951 EFB2_01952 EFB2_01953 EFB2_01954 EFB2_01955
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 N.D. -0.1 -4.5 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 N.D. +0.1 -2.9 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.2 N.D. -0.9 -2.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 N.D. -2.2 -0.4 -0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 N.D. -0.7 -2.0 +0.1
no phage control BHIS no phage control -0.1 N.D. -0.8 -1.5 +0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 N.D. -0.2 -1.5 -0.4
mixed community no phage control BHIS no phage control with 14 member community -0.0 N.D. -0.3 -1.3 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 N.D. -0.3 -1.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 N.D. +0.6 -2.8 +0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 N.D. -0.7 -0.8 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 N.D. +0.5 -2.0 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 N.D. -1.5 +0.5 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 N.D. -2.0 +1.4 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 N.D. -0.5 +0.4 -0.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 N.D. +0.9 -1.3 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.5 N.D. -1.0 +1.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 N.D. +0.6 -1.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 N.D. +0.9 -0.8 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 N.D. -0.1 +0.9 -1.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 N.D. -0.2 +1.0 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 N.D. +0.6 -0.5 +0.5
no phage control BHIS_CaCl2 no phage control -0.3 N.D. -1.3 +1.0 +1.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 N.D. +0.2 +1.1 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 N.D. -0.5 +1.0 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 N.D. +0.8 +0.4 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 N.D. -0.0 +1.7 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.4 N.D. +1.1 +0.9 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 N.D. +0.3 +1.4 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 N.D. +0.4 +2.0 +0.2
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