Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01916 and EFB2_01917 overlap by 4 nucleotidesEFB2_01917 and EFB2_01918 are separated by 30 nucleotidesEFB2_01918 and EFB2_01919 are separated by 21 nucleotidesEFB2_01919 and EFB2_01920 overlap by 8 nucleotides EFB2_01916: EFB2_01916 - Multidrug export protein MepA, at 2,057,029 to 2,058,468 _01916 EFB2_01917: EFB2_01917 - Surfactin synthase subunit 1, at 2,058,465 to 2,062,832 _01917 EFB2_01918: EFB2_01918 - hypothetical protein, at 2,062,863 to 2,065,322 _01918 EFB2_01919: EFB2_01919 - Protein flp, at 2,065,344 to 2,066,849 _01919 EFB2_01920: EFB2_01920 - Thioesterase PikA5, at 2,066,842 to 2,067,564 _01920
Group Condition EFB2_01916 EFB2_01917 EFB2_01918 EFB2_01919 EFB2_01920
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.1 -0.0 +0.1 -0.1
no phage control BHIS no phage control +0.1 +0.0 -0.0 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 +0.1 -0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.2 +0.0 -0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.0 +0.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.0 -0.1 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.1 +0.0 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 -0.0 +0.1 +0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 +0.1 -0.2 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.0 -0.1 -0.0 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.1 +0.1 -0.1 +0.1
no phage control BHIS_CaCl2 no phage control -0.0 +0.0 +0.2 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 +0.0 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.2 +0.1 +0.2 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 -0.1 +0.1 +0.0
no phage control BHIS no phage control +0.1 -0.1 -0.0 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 +0.1 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.0 -0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.0 +0.0 -0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 +0.1 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.1 +0.0 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 -0.1 +0.0 +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.1 +0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 +0.1 +0.0 +0.1
no phage control BHIS_CaCl2 no phage control +0.0 +0.1 +0.1 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.0 +0.0 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 +0.0 +0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.0 +0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 +0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 +0.0 +0.0 +0.2
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