Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01910 and EFB2_01911 are separated by 47 nucleotidesEFB2_01911 and EFB2_01912 are separated by 49 nucleotidesEFB2_01912 and EFB2_01913 are separated by 43 nucleotidesEFB2_01913 and EFB2_01914 are separated by 10 nucleotides EFB2_01910: EFB2_01910 - Malonyl CoA-acyl carrier protein transacylase, at 2,033,298 to 2,034,566 _01910 EFB2_01911: EFB2_01911 - Gramicidin S synthase 2, at 2,034,614 to 2,039,410 _01911 EFB2_01912: EFB2_01912 - Phthiocerol synthesis polyketide synthase type I PpsE, at 2,039,460 to 2,042,492 _01912 EFB2_01913: EFB2_01913 - Tyrocidine synthase 3, at 2,042,536 to 2,049,036 _01913 EFB2_01914: EFB2_01914 - D-alanine--D-alanyl carrier protein ligase, at 2,049,047 to 2,055,511 _01914
Group Condition EFB2_01910 EFB2_01911 EFB2_01912 EFB2_01913 EFB2_01914
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 -0.0 -0.0 -0.0
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.0 -0.0 -0.0 -0.0
no phage control BHIS_CaCl2 no phage control -0.0 +0.0 +0.1 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.0 -0.1 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 -0.2 +0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.1 +0.0 +0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.0 -0.0 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.0 +0.1 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.0 +0.0 +0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community -0.1 +0.0 -0.0 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.0 +0.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 +0.0 +0.1 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.0 -0.1 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.1 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.0 -0.1 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 +0.1 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.0 +0.2 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.1 -0.0 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 -0.1 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.0 -0.0 -0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.0 -0.0 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.0 +0.1 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 +0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.0 +0.1 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.0 +0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.1 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.2 +0.0 +0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 +0.2 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.1 +0.1 +0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.1 +0.3 +0.0 -0.0
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