Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01903 and EFB2_01904 are separated by 0 nucleotidesEFB2_01904 and EFB2_01905 are separated by 417 nucleotidesEFB2_01905 and EFB2_01906 are separated by 40 nucleotidesEFB2_01906 and EFB2_01907 are separated by 12 nucleotides EFB2_01903: EFB2_01903 - 4'-phosphopantetheinyl transferase Sfp, at 2,017,384 to 2,018,118 _01903 EFB2_01904: EFB2_01904 - Transcriptional regulatory protein RcsA, at 2,018,119 to 2,018,331 _01904 EFB2_01905: EFB2_01905 - D-alanine--D-alanyl carrier protein ligase, at 2,018,749 to 2,028,369 _01905 EFB2_01906: EFB2_01906 - hypothetical protein, at 2,028,410 to 2,031,010 _01906 EFB2_01907: EFB2_01907 - 3-hydroxybutyryl-CoA dehydrogenase, at 2,031,023 to 2,031,889 _01907
Group Condition EFB2_01903 EFB2_01904 EFB2_01905 EFB2_01906 EFB2_01907
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.9 -0.1 -0.0 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.8 +0.2 +0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.7 +0.0 -0.1 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.3 -0.8 -0.0 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.5 +0.3 +0.0 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.6 +0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.9 +0.9 -0.0 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.5 -0.5 +0.0 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 +0.4 +0.0 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 +0.7 +0.0 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.4 +0.4 -0.0 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.6 +0.7 -0.0 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.5 -0.4 +0.0 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.4 +0.7 -0.0 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.7 -0.4 -0.0 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.6 +0.9 -0.0 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 +0.6 -0.0 -0.1 +0.0
no phage control BHIS_CaCl2 no phage control +0.3 +0.5 -0.1 -0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.5 +1.0 +0.0 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.6 +0.0 +0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 +0.4 -0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.8 +0.0 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 +0.8 +0.0 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.4 +0.5 -0.0 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.7 +0.0 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.9 -0.0 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.9 +0.2 -0.0 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.9 -0.0 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.6 +0.6 -0.1 +0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.7 +1.7 +0.1 +0.1 +0.2
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