Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01859 and EFB2_01860 are separated by 92 nucleotidesEFB2_01860 and EFB2_01861 are separated by 188 nucleotidesEFB2_01861 and EFB2_01862 are separated by 150 nucleotidesEFB2_01862 and EFB2_01863 overlap by 4 nucleotides EFB2_01859: EFB2_01859 - hypothetical protein, at 1,970,084 to 1,970,737 _01859 EFB2_01860: EFB2_01860 - hypothetical protein, at 1,970,830 to 1,971,141 _01860 EFB2_01861: EFB2_01861 - IS3 family transposase ISEc31, at 1,971,330 to 1,972,007 _01861 EFB2_01862: EFB2_01862 - hypothetical protein, at 1,972,158 to 1,973,228 _01862 EFB2_01863: EFB2_01863 - hypothetical protein, at 1,973,225 to 1,974,130 _01863
Group Condition EFB2_01859 EFB2_01860 EFB2_01861 EFB2_01862 EFB2_01863
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.2 +0.0 -0.0 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.3 -0.3 -0.1 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 -0.2 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.3 +0.0 +0.0 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 -0.4 +0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.3 -0.1 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.5 -0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.6 -0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.2 -0.1 +0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.6 +0.1 -0.0 +0.2
no phage control BHIS no phage control +0.0 -0.3 -0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.2 +0.2 -0.3 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.0 -0.2 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.3 -0.1 +0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.5 +0.2 +0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.0 +0.1 +0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.3 -0.0 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 +0.1 -0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.5 +0.2 +0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.2 -0.1 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.5 +0.0 +0.3 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.2 +0.0 +0.2 -0.1
no phage control BHIS_CaCl2 no phage control +0.5 -0.8 +0.2 +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 -0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.3 -0.0 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 +0.2 +0.1 +0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.2 +0.1 -0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.2 +0.1 -0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.4 +0.1 +0.3 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.4 +0.1 -0.0 +0.0
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