Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01788 and EFB2_01789 are separated by 91 nucleotidesEFB2_01789 and EFB2_01790 are separated by 21 nucleotidesEFB2_01790 and EFB2_01791 are separated by 67 nucleotidesEFB2_01791 and EFB2_01792 are separated by 658 nucleotides EFB2_01788: EFB2_01788 - Uridine kinase, at 1,900,162 to 1,900,803 _01788 EFB2_01789: EFB2_01789 - dCTP deaminase, at 1,900,895 to 1,901,476 _01789 EFB2_01790: EFB2_01790 - hypothetical protein, at 1,901,498 to 1,903,351 _01790 EFB2_01791: EFB2_01791 - hypothetical protein, at 1,903,419 to 1,905,002 _01791 EFB2_01792: EFB2_01792 - hypothetical protein, at 1,905,661 to 1,906,800 _01792
Group Condition EFB2_01788 EFB2_01789 EFB2_01790 EFB2_01791 EFB2_01792
no phage control BHIS_CaCl2 no phage control -0.3 N.D. -0.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.2 N.D. -0.0 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 N.D. -0.3 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 N.D. +0.1 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 N.D. +0.2 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 N.D. -0.3 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 N.D. +0.1 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 N.D. -0.0 -0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 N.D. +0.2 -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.3 N.D. +0.2 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 N.D. +0.3 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 N.D. +0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 N.D. +0.1 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 N.D. +0.3 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 N.D. +0.2 -0.3 +0.2
no phage control BHIS no phage control -0.2 N.D. +0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.2 N.D. +0.2 -0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 N.D. +0.2 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 N.D. +0.3 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 N.D. +0.2 -0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 N.D. +0.2 +0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 N.D. +0.2 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 N.D. +0.2 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 N.D. +0.2 +0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 N.D. +0.3 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 N.D. +0.4 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 N.D. +0.1 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 N.D. +0.3 -0.0 +0.2
mixed community no phage control BHIS no phage control with 14 member community +0.2 N.D. +0.3 -0.0 +0.1
no phage control BHIS_CaCl2 no phage control +0.8 N.D. -0.1 -0.0 +0.3
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EFB2_01788
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EFB2_01792
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