Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01776 and EFB2_01777 overlap by 4 nucleotidesEFB2_01777 and EFB2_01778 overlap by 4 nucleotidesEFB2_01778 and EFB2_01779 are separated by 0 nucleotidesEFB2_01779 and EFB2_01780 are separated by 0 nucleotides EFB2_01776: EFB2_01776 - Transcriptional regulatory protein BaeR, at 1,878,853 to 1,879,575 _01776 EFB2_01777: EFB2_01777 - Signal transduction histidine-protein kinase BaeS, at 1,879,572 to 1,880,975 _01777 EFB2_01778: EFB2_01778 - Putative multidrug resistance protein MdtD, at 1,880,972 to 1,882,387 _01778 EFB2_01779: EFB2_01779 - Multidrug resistance protein MdtC, at 1,882,388 to 1,885,465 _01779 EFB2_01780: EFB2_01780 - Multidrug resistance protein MdtB, at 1,885,466 to 1,888,588 _01780
Group Condition EFB2_01776 EFB2_01777 EFB2_01778 EFB2_01779 EFB2_01780
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.2 -0.0 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 -0.1 +0.0 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.3 -0.0 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.2 -0.0 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.0 -0.2 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 -0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.1 +0.1 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 -0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.1 +0.0 +0.0 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.1 -0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 +0.1 +0.0 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.2 -0.0 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 -0.0 -0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community +0.2 -0.1 +0.1 -0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.0 -0.0 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.1 +0.2 +0.0 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.0 +0.1 -0.1 +0.1 +0.2
no phage control BHIS no phage control +0.1 -0.1 +0.1 +0.1 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.2 +0.0 +0.2 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 +0.0 -0.0 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 -0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.1 +0.1 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 -0.0 -0.0 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.0 +0.1 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.0 +0.3 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 +0.0 +0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 +0.2 +0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.3 +0.2 +0.1 +0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.3 +0.1 +0.0 +0.2
no phage control BHIS_CaCl2 no phage control +0.4 +0.5 -0.1 +0.1 +0.2
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EFB2_01776
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EFB2_01777
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EFB2_01779
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EFB2_01780
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