Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01762 and EFB2_01763 are separated by 9 nucleotidesEFB2_01763 and EFB2_01764 are separated by 30 nucleotidesEFB2_01764 and EFB2_01765 are separated by 3 nucleotidesEFB2_01765 and EFB2_01766 are separated by 47 nucleotides EFB2_01762: EFB2_01762 - D-tagatose-1,6-bisphosphate aldolase subunit GatZ, at 1,864,244 to 1,865,506 _01762 EFB2_01763: EFB2_01763 - PTS system galactitol-specific EIIA component, at 1,865,516 to 1,865,968 _01763 EFB2_01764: EFB2_01764 - PTS system galactitol-specific EIIB component, at 1,865,999 to 1,866,283 _01764 EFB2_01765: EFB2_01765 - PTS system galactitol-specific EIIC component, at 1,866,287 to 1,867,642 _01765 EFB2_01766: EFB2_01766 - Galactitol 1-phosphate 5-dehydrogenase, at 1,867,690 to 1,868,730 _01766
Group Condition EFB2_01762 EFB2_01763 EFB2_01764 EFB2_01765 EFB2_01766
no phage control BHIS_CaCl2 no phage control -0.1 -0.9 -1.4 -0.3 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -1.1 -0.6 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.0 -1.5 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.7 -0.6 -0.0 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.0 -1.5 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.8 -0.4 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.5 -0.5 -0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.3 -0.8 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.7 -0.4 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.3 -0.5 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.4 -0.7 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.8 -0.0 -0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.2 -1.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.4 -0.9 +0.1 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -0.5 -0.7 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.3 -0.7 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.2 -0.7 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.4 -1.0 -0.0 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.6 -0.4 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.2 -0.7 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.2 -0.6 -0.1 +0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.1 -0.5 +0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.2 -0.5 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.3 -0.4 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.5 -0.8 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.7 +0.2 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.5 +0.0 +0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.4 +0.4 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.3 +0.3 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.7 -0.1 +0.0 +0.0
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