Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01723 and EFB2_01724 are separated by 189 nucleotidesEFB2_01724 and EFB2_01725 are separated by 6 nucleotidesEFB2_01725 and EFB2_01726 overlap by 8 nucleotidesEFB2_01726 and EFB2_01727 are separated by 4 nucleotides EFB2_01723: EFB2_01723 - Beta-xylosidase, at 1,818,238 to 1,820,505 _01723 EFB2_01724: EFB2_01724 - Glycine betaine-binding protein YehZ, at 1,820,695 to 1,821,612 _01724 EFB2_01725: EFB2_01725 - Glycine betaine uptake system permease protein YehY, at 1,821,619 to 1,822,776 _01725 EFB2_01726: EFB2_01726 - Glycine betaine uptake system ATP-binding protein YehX, at 1,822,769 to 1,823,695 _01726 EFB2_01727: EFB2_01727 - Glycine betaine uptake system permease protein YehW, at 1,823,700 to 1,824,431 _01727
Group Condition EFB2_01723 EFB2_01724 EFB2_01725 EFB2_01726 EFB2_01727
no phage control BHIS_CaCl2 no phage control -0.5 -0.3 -0.4 +0.4 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.0 -0.3 -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.5 +0.0 +0.0
no phage control BHIS no phage control -0.2 -0.2 -0.0 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.1 -0.3 -0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.1 -0.3 -0.3 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 -0.2 -0.0 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.2 -0.2 -0.1 -0.4
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.1 -0.1 -0.4 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 -0.1 +0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 +0.1 -0.2 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 +0.3 -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 -0.4 -0.1 +0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 +0.2 -0.2 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.2 +0.2 -0.0 +0.1 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 +0.3 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.0 +0.2 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.1 +0.3 +0.2 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 +0.2 -0.1 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 +0.3 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 +0.1 -0.1 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 -0.1 -0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.1 +0.3 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.1 -0.1 +0.2 +0.1
no phage control BHIS no phage control -0.0 +0.1 +0.1 -0.1 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.3 -0.1 +0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.2 +0.1 +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.2 +0.1 +0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.3 +0.3 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 +0.4 -0.1 +0.2
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EFB2_01723
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EFB2_01724
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EFB2_01727
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