Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01695 and EFB2_01696 are separated by 267 nucleotidesEFB2_01696 and EFB2_01697 are separated by 3 nucleotidesEFB2_01697 and EFB2_01698 are separated by 73 nucleotidesEFB2_01698 and EFB2_01699 are separated by 173 nucleotides EFB2_01695: EFB2_01695 - Pyrimidine-specific ribonucleoside hydrolase RihB, at 1,786,191 to 1,787,132 _01695 EFB2_01696: EFB2_01696 - Pseudouridine kinase, at 1,787,400 to 1,788,488 _01696 EFB2_01697: EFB2_01697 - Endonuclease 4, at 1,788,492 to 1,789,349 _01697 EFB2_01698: EFB2_01698 - hypothetical protein, at 1,789,423 to 1,790,472 _01698 EFB2_01699: EFB2_01699 - HTH-type transcriptional regulator CysL, at 1,790,646 to 1,791,452 _01699
Group Condition EFB2_01695 EFB2_01696 EFB2_01697 EFB2_01698 EFB2_01699
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 -0.0 +0.0 +0.0 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.4 +0.1 -0.1 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.0 -0.2 -0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.2 +0.2 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.0 -0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 +0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.1 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 +0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community -0.2 +0.1 +0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.0 -0.2 +0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.2 +0.1 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.0 +0.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.1 +0.0 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.1 -0.0 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.0 +0.1 -0.2 +0.2
no phage control BHIS_CaCl2 no phage control +0.1 -0.0 -0.1 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.1 -0.2 +0.4 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.1 -0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 +0.0 -0.1 -0.1 +0.1
no phage control BHIS_CaCl2 no phage control +0.5 +0.1 -0.5 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.0 -0.2 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.1 +0.0 +0.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.1 -0.0 +0.3 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 +0.0 -0.0 +0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 -0.0 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 +0.1 +0.2 -0.1
no phage control BHIS no phage control -0.1 +0.0 +0.1 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 +0.1 +0.1 +0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 +0.2 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.4 +0.2 +0.3 +0.2 +0.1
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