Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01674 and EFB2_01675 are separated by 333 nucleotidesEFB2_01675 and EFB2_01676 are separated by 3 nucleotidesEFB2_01676 and EFB2_01677 are separated by 1 nucleotidesEFB2_01677 and EFB2_01678 overlap by 1 nucleotides EFB2_01674: EFB2_01674 - Bicyclomycin resistance protein, at 1,761,588 to 1,762,778 _01674 EFB2_01675: EFB2_01675 - putative protein YejG, at 1,763,112 to 1,763,456 _01675 EFB2_01676: EFB2_01676 - putative ABC transporter ATP-binding protein YejF, at 1,763,460 to 1,765,049 _01676 EFB2_01677: EFB2_01677 - Inner membrane ABC transporter permease protein YejE, at 1,765,051 to 1,766,076 _01677 EFB2_01678: EFB2_01678 - Inner membrane ABC transporter permease protein YejB, at 1,766,076 to 1,767,170 _01678
Group Condition EFB2_01674 EFB2_01675 EFB2_01676 EFB2_01677 EFB2_01678
no phage control BHIS_CaCl2 no phage control +0.1 -1.5 -0.1 -0.2 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.8 +0.0 +0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.3 -0.1 -0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.5 +0.0 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.2 +0.1 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.5 -0.1 +0.0 +0.0
no phage control BHIS no phage control +0.0 -0.3 -0.1 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.3 +0.0 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 +0.1 -0.1 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.4 +0.1 -0.0 -0.1
no phage control BHIS_CaCl2 no phage control -0.0 -0.4 +0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.3 +0.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.4 +0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.7 +0.1 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 -0.4 +0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.4 +0.1 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.2 -0.1 +0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.1 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.3 +0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.3 +0.1 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.2 +0.2 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.1 -0.2 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.1 +0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.2 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.3 +0.2 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.2 +0.0 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.3 -0.0 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.1 -0.0 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.3 -0.1 -0.1 +0.2
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.2 +0.1 -0.1 +0.2
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EFB2_01674
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EFB2_01675
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EFB2_01678
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