Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01660 and EFB2_01661 overlap by 4 nucleotidesEFB2_01661 and EFB2_01662 overlap by 4 nucleotidesEFB2_01662 and EFB2_01663 are separated by 34 nucleotidesEFB2_01663 and EFB2_01664 are separated by 319 nucleotides EFB2_01660: EFB2_01660 - Cytochrome c-type biogenesis protein CcmF, at 1,749,627 to 1,751,570 _01660 EFB2_01661: EFB2_01661 - Thiol:disulfide interchange protein DsbE, at 1,751,567 to 1,752,124 _01661 EFB2_01662: EFB2_01662 - Cytochrome c-type biogenesis protein CcmH, at 1,752,121 to 1,753,173 _01662 EFB2_01663: EFB2_01663 - Nitrate/nitrite response regulator protein NarL, at 1,753,208 to 1,753,855 _01663 EFB2_01664: EFB2_01664 - hypothetical protein, at 1,754,175 to 1,754,378 _01664
Group Condition EFB2_01660 EFB2_01661 EFB2_01662 EFB2_01663 EFB2_01664
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.1 +0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.2 -0.1 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 +0.1 -0.0 -0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.3 -0.1 -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.3 -0.1 +0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.0 -0.1 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.0 -0.1 +0.3 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.3 -0.1 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 +0.1 -0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.0 -0.1 +0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 +0.2 +0.1 +0.4 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.2 -0.0 +0.1 +0.3
no phage control BHIS_CaCl2 no phage control +0.3 -0.4 -0.0 +0.5 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.2 +0.0 +0.3 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 -0.1 +0.1 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 -0.0 -0.3 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 +0.1 +0.1 +0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.0 -0.0 +0.4
no phage control BHIS no phage control -0.1 +0.2 +0.0 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 +0.0 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 +0.3 +0.1 -0.3 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.2 -0.1 +0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 +0.1 -0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 -0.0 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 +0.1 +0.1 +0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.2 +0.2 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 +0.2 +0.4 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 +0.2 -0.0 +0.2
mixed community no phage control BHIS no phage control with 14 member community +0.0 +0.0 +0.0 +0.3 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.0 +0.1 +0.5 +0.0
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