Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01605 and EFB2_01606 are separated by 278 nucleotidesEFB2_01606 and EFB2_01607 are separated by 99 nucleotidesEFB2_01607 and EFB2_01608 are separated by 219 nucleotidesEFB2_01608 and EFB2_01609 are separated by 14 nucleotides EFB2_01605: EFB2_01605 - Nucleoside triphosphatase NudI, at 1,680,458 to 1,680,883 _01605 EFB2_01606: EFB2_01606 - hypothetical protein, at 1,681,162 to 1,681,704 _01606 EFB2_01607: EFB2_01607 - Nicotinamide-nucleotide amidohydrolase PncC, at 1,681,804 to 1,683,006 _01607 EFB2_01608: EFB2_01608 - putative HTH-type transcriptional regulator RhmR, at 1,683,226 to 1,684,008 _01608 EFB2_01609: EFB2_01609 - L-rhamnonate dehydratase, at 1,684,023 to 1,685,228 _01609
Group Condition EFB2_01605 EFB2_01606 EFB2_01607 EFB2_01608 EFB2_01609
no phage control BHIS no phage control -0.2 -0.3 -0.1 -0.2 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.4 -0.2 -0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.0 -0.1 -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.3 -0.3 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.1 -0.0 +0.1 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.2 -0.1 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 -0.2 +0.1 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.2 +0.1 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.2 +0.1 +0.0 -0.1
no phage control BHIS_CaCl2 no phage control -0.1 -0.1 -0.0 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 -0.1 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 +0.2 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.1 +0.1 -0.2
no phage control BHIS_CaCl2 no phage control -0.2 +0.0 -0.2 +0.0 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.2 -0.2 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.3 +0.1 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 -0.2 +0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.2 -0.1 -0.0 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.2 +0.0 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.0 -0.0 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 -0.0 +0.2 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 +0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 +0.1 +0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.0 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 +0.2 -0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.2 -0.1 +0.3 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 -0.0 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 +0.2 -0.0 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.1 +0.1 +0.3 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.1 +0.1 +0.1 +0.2
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