Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01597 and EFB2_01598 overlap by 1 nucleotidesEFB2_01598 and EFB2_01599 overlap by 4 nucleotidesEFB2_01599 and EFB2_01600 overlap by 1 nucleotidesEFB2_01600 and EFB2_01601 overlap by 4 nucleotides EFB2_01597: EFB2_01597 - putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF, at 1,672,159 to 1,672,545 _01597 EFB2_01598: EFB2_01598 - putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 1,672,545 to 1,672,880 _01598 EFB2_01599: EFB2_01599 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 1,672,877 to 1,674,529 _01599 EFB2_01600: EFB2_01600 - putative 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, at 1,674,529 to 1,675,419 _01600 EFB2_01601: EFB2_01601 - Bifunctional polymyxin resistance protein ArnA, at 1,675,416 to 1,677,398 _01601
Group Condition EFB2_01597 EFB2_01598 EFB2_01599 EFB2_01600 EFB2_01601
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.1 -0.1 -0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.2 +0.1 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.2 +0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.4 -0.0 -0.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.2 +0.0 -0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.4 -0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.0 -0.1 -0.0 +0.4 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.3 -0.1 +0.2 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 +0.5 -0.0 -0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.2 +0.5 +0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 +0.3 +0.0 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.2 +0.1 +0.1 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 +0.3 +0.1 -0.1 +0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.2 +0.1 +0.1 -0.0 +0.2
no phage control BHIS_CaCl2 no phage control -0.4 +0.5 +0.1 -0.2 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.5 +0.0 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.4 -0.0 -0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.4 +0.1 -0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.3 +0.1 -0.0 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.2 -0.0 +0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.2 +0.0 +0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.5 -0.0 -0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.2 -0.0 +0.3 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 +0.2 +0.1 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 +0.4 -0.0 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.4 +0.0 +0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 +0.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.4 +0.1 +0.4 -0.1
no phage control BHIS no phage control -0.0 +0.4 +0.1 +0.3 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.4 +0.2 +0.1 +0.1
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EFB2_01597
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