Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01574 and EFB2_01575 overlap by 4 nucleotidesEFB2_01575 and EFB2_01576 are separated by 52 nucleotidesEFB2_01576 and EFB2_01577 overlap by 4 nucleotidesEFB2_01577 and EFB2_01578 are separated by 14 nucleotides EFB2_01574: EFB2_01574 - NADH-quinone oxidoreductase subunit E, at 1,647,365 to 1,647,865 _01574 EFB2_01575: EFB2_01575 - NADH-quinone oxidoreductase subunit F, at 1,647,862 to 1,649,199 _01575 EFB2_01576: EFB2_01576 - NADH-quinone oxidoreductase subunit G, at 1,649,252 to 1,651,978 _01576 EFB2_01577: EFB2_01577 - NADH-quinone oxidoreductase subunit H, at 1,651,975 to 1,652,952 _01577 EFB2_01578: EFB2_01578 - NADH-quinone oxidoreductase subunit I, at 1,652,967 to 1,653,509 _01578
Group Condition EFB2_01574 EFB2_01575 EFB2_01576 EFB2_01577 EFB2_01578
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.8 -0.9 -0.6 -1.9 -0.1
no phage control BHIS_CaCl2 no phage control -1.4 -0.4 -0.8 -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.8 -0.7 -0.0 -0.4 -0.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 +0.1 -0.1 -0.8 -1.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.6 +0.1 -0.5 -0.5 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.7 -0.5 -0.2 -0.4 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.7 -0.4 -0.3 -0.0 -0.8
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.6 -0.7 -0.2 +0.3 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 -0.3 -0.4 -0.6 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.7 -0.4 -0.1 -0.5 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.3 -0.2 +0.0 -0.6 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.4 -0.2 -0.3 -0.6 -0.1
mixed community no phage control BHIS no phage control with 14 member community -1.2 +0.0 +0.1 +0.3 -0.9
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.7 -0.2 -0.2 +0.6 -1.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.3 -0.1 -0.5 +0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.5 -0.3 -0.0 -0.2 -1.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.3 +0.4 +0.1 -1.1 -0.5
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.5 -0.1 +0.3 -1.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.4 -0.6 -0.3 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.4 -0.5 +0.1 +0.0 -0.9
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 -0.3 +0.6 -0.7
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.7 -0.2 +0.1 -0.5 -0.7
no phage control BHIS no phage control -0.7 -0.1 +0.1 +0.5 -0.3
mixed community no phage control BHIS no phage control with 14 member community +0.3 -0.3 -0.2 +0.6 -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -0.5 -0.2 +0.6 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.2 +0.3 +0.7 -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.6 -0.2 -0.3 +0.7 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.8 +0.0 -0.3 +0.8 +0.8
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.5 +0.1 -0.4 +0.6 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.9 +0.3 -0.5 +0.7 -0.5
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EFB2_01574
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EFB2_01575
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EFB2_01578
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