Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01553 and EFB2_01554 are separated by 47 nucleotidesEFB2_01554 and EFB2_01555 are separated by 20 nucleotidesEFB2_01555 and EFB2_01556 are separated by 56 nucleotidesEFB2_01556 and EFB2_01557 are separated by 135 nucleotides EFB2_01553: EFB2_01553 - ISNCY family transposase ISRor2, at 1,625,878 to 1,626,768 _01553 EFB2_01554: EFB2_01554 - Epimerase family protein, at 1,626,816 to 1,627,709 _01554 EFB2_01555: EFB2_01555 - Dihydroneopterin triphosphate 2'-epimerase, at 1,627,730 to 1,628,092 _01555 EFB2_01556: EFB2_01556 - Disulfide-bond oxidoreductase YfcG, at 1,628,149 to 1,628,796 _01556 EFB2_01557: EFB2_01557 - Glutathione S-transferase YfcF, at 1,628,932 to 1,629,576 _01557
Group Condition EFB2_01553 EFB2_01554 EFB2_01555 EFB2_01556 EFB2_01557
no phage control BHIS_CaCl2 no phage control -0.3 -0.0 +0.0 -0.1 -0.1
no phage control BHIS_CaCl2 no phage control +0.0 -0.1 -0.2 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 +0.1 -0.0 -0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 -0.2 +0.2 -0.1
no phage control BHIS_CaCl2 no phage control -0.2 +0.0 +0.2 +0.3 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.3 -0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 -0.0 -0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.0 -0.2 -0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.1 -0.2 +0.2 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 -0.0 -0.1 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 -0.3 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.0 +0.2 +0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 +0.2 +0.0 -0.2
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.0 +0.2 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 +0.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.2 -0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.2 +0.2 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.2 -0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.3 +0.3 -0.2 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.0 +0.2 -0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 +0.2 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.0 -0.1 +0.3 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.2 +0.2 -0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.0 -0.1 -0.0 +0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 +0.1 +0.1 -0.0 +0.2
no phage control BHIS no phage control +0.2 +0.1 +0.2 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.0 +0.0 +0.1 +0.2
no phage control BHIS no phage control +0.1 +0.1 +0.0 +0.2 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 +0.0 +0.0 +0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.3 +0.2 -0.2 +0.3
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