Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01530 and EFB2_01531 overlap by 1 nucleotidesEFB2_01531 and EFB2_01532 overlap by 1 nucleotidesEFB2_01532 and EFB2_01533 are separated by 33 nucleotidesEFB2_01533 and EFB2_01534 are separated by 120 nucleotides EFB2_01530: EFB2_01530 - Penicillin-insensitive murein endopeptidase, at 1,602,852 to 1,603,676 _01530 EFB2_01531: EFB2_01531 - putative membrane transporter protein YfcA, at 1,603,676 to 1,604,485 _01531 EFB2_01532: EFB2_01532 - Elongation factor P hydroxylase, at 1,604,485 to 1,605,033 _01532 EFB2_01533: EFB2_01533 - hypothetical protein, at 1,605,067 to 1,605,345 _01533 EFB2_01534: EFB2_01534 - tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC, at 1,605,466 to 1,607,472 _01534
Group Condition EFB2_01530 EFB2_01531 EFB2_01532 EFB2_01533 EFB2_01534
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.0 -0.3 -0.4 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.3 -0.1 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.3 +0.2 -0.0 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.2 -0.2 -0.0 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 +0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 -0.1 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 -0.2 -0.1 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 +0.0 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 +0.1 -0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.1 -0.1 -0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.2 -0.0 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.0 +0.1 -0.3 +0.0
no phage control BHIS_CaCl2 no phage control -0.1 +0.1 -0.1 +0.1 -0.1
no phage control BHIS_CaCl2 no phage control +0.2 +0.6 -0.1 -0.6 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 -0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.1 +0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.0 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.0 +0.1 +0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.0 +0.0 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -0.1 -0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.2 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 +0.1 +0.1 -0.0
no phage control BHIS_CaCl2 no phage control +0.3 +0.0 -0.1 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.0 +0.0 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.2 -0.0 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.3 +0.0 +0.0 +0.0 +0.1
no phage control BHIS no phage control +0.3 +0.2 +0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community +0.2 +0.3 +0.0 -0.0 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 +0.1 +0.2 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 +0.2 +0.1 +0.0 +0.2
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