Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01486 and EFB2_01487 are separated by 218 nucleotidesEFB2_01487 and EFB2_01488 are separated by 21 nucleotidesEFB2_01488 and EFB2_01489 are separated by 15 nucleotidesEFB2_01489 and EFB2_01490 overlap by 1 nucleotides EFB2_01486: EFB2_01486 - Glucokinase, at 1,551,420 to 1,552,385 _01486 EFB2_01487: EFB2_01487 - PTS system fructose-like EIIB component 1, at 1,552,604 to 1,552,930 _01487 EFB2_01488: EFB2_01488 - Fructose-like permease IIC component 1, at 1,552,952 to 1,554,199 _01488 EFB2_01489: EFB2_01489 - Aminopeptidase YpdF, at 1,554,215 to 1,555,300 _01489 EFB2_01490: EFB2_01490 - Aminopeptidase YpdE, at 1,555,300 to 1,556,337 _01490
Group Condition EFB2_01486 EFB2_01487 EFB2_01488 EFB2_01489 EFB2_01490
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 -0.7 -0.1 -0.1 -0.3
no phage control BHIS_CaCl2 no phage control +0.0 -0.8 -0.1 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.7 -0.0 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -1.1 +0.0 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.4 -0.2 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.8 -0.1 +0.2 -0.1
no phage control BHIS_CaCl2 no phage control +0.0 -0.6 -0.1 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 +0.0 -0.1 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.5 -0.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.4 -0.1 -0.0 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 -0.5 -0.0 +0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.6 -0.1 +0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.5 -0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 -0.5 -0.1 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.6 -0.1 +0.3 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.2 -0.2 -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.6 +0.0 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.4 -0.1 -0.5 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.4 -0.1 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.3 -0.1 -0.2 -0.2
no phage control BHIS no phage control -0.0 +0.4 -0.0 -0.3 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.4 -0.0 -0.0 -0.2
no phage control BHIS no phage control -0.1 +0.4 -0.1 -0.1 +0.2
no phage control BHIS_CaCl2 no phage control -0.4 +0.5 -0.0 +0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 +0.4 -0.1 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.7 -0.0 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.2 -0.1 +0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.7 -0.0 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.4 -0.0 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.9 +0.0 +0.1 +0.1
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