Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01442 and EFB2_01443 are separated by 5 nucleotidesEFB2_01443 and EFB2_01444 are separated by 0 nucleotidesEFB2_01444 and EFB2_01445 are separated by 213 nucleotidesEFB2_01445 and EFB2_01446 overlap by 14 nucleotides EFB2_01442: EFB2_01442 - hypothetical protein, at 1,510,625 to 1,511,677 _01442 EFB2_01443: EFB2_01443 - Oxygen-dependent coproporphyrinogen-III oxidase, at 1,511,683 to 1,512,585 _01443 EFB2_01444: EFB2_01444 - N-acetylmuramoyl-L-alanine amidase AmiA, at 1,512,586 to 1,513,455 _01444 EFB2_01445: EFB2_01445 - Acetyltransferase YpeA, at 1,513,669 to 1,514,094 _01445 EFB2_01446: EFB2_01446 - Inner membrane protein YfeZ, at 1,514,081 to 1,514,530 _01446
Group Condition EFB2_01442 EFB2_01443 EFB2_01444 EFB2_01445 EFB2_01446
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.1 -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.2 +0.1 +0.3 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.0 +0.1 +0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.0 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.3 +0.0 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 +0.1 +0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 +0.1 +0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.0 +0.1 +0.2 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 +0.1 +0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.1 +0.3 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.2 -0.0 +0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.0 +0.2 +0.2 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 +0.1 +0.3 -0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 +0.1 +0.1 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.1 +0.3 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.1 +0.2 +0.2 -0.1
no phage control BHIS no phage control -0.1 +0.3 +0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 +0.1 +0.1 +0.3 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.0 +0.2 +0.0 -0.1
no phage control BHIS_CaCl2 no phage control +0.1 +0.3 -0.1 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.0 +0.1 +0.2 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.0 +0.2 +0.4 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 -0.1 +0.1 +0.3
mixed community no phage control BHIS no phage control with 14 member community +0.0 +0.1 +0.1 -0.0 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.3 -0.0 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.2 +0.2 -0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.2 +0.1 +0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.2 +0.2 +0.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 +0.1 +0.0 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.2 +0.1 +0.3
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