Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01438 and EFB2_01439 are separated by 20 nucleotidesEFB2_01439 and EFB2_01440 are separated by 9 nucleotidesEFB2_01440 and EFB2_01441 are separated by 12 nucleotidesEFB2_01441 and EFB2_01442 are separated by 45 nucleotides EFB2_01438: EFB2_01438 - Ethanolamine ammonia-lyase heavy chain, at 1,507,128 to 1,508,489 _01438 EFB2_01439: EFB2_01439 - Ethanolamine ammonia-lyase light chain, at 1,508,510 to 1,509,397 _01439 EFB2_01440: EFB2_01440 - Ethanolamine utilization protein EutL, at 1,509,407 to 1,510,066 _01440 EFB2_01441: EFB2_01441 - Ethanolamine utilization protein EutK, at 1,510,079 to 1,510,579 _01441 EFB2_01442: EFB2_01442 - hypothetical protein, at 1,510,625 to 1,511,677 _01442
Group Condition EFB2_01438 EFB2_01439 EFB2_01440 EFB2_01441 EFB2_01442
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 +0.1 +0.1 -0.4 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.1 -0.0 -0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 -0.1 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.1 +0.1 -0.3 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 -0.1 +0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.0 -0.3 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 +0.1 -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.1 -0.1 +0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.2 +0.0 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.1 +0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.1 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.2 -0.0 +0.3 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.2 -0.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.0 +0.1 +0.4 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 +0.2 +0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.0 +0.2 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.2 -0.0 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.1 +0.0 +0.5 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 +0.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.2 +0.1 +0.5 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 +0.1 -0.0 +0.5 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.1 +0.1 +0.3 +0.1
no phage control BHIS no phage control +0.1 +0.1 +0.1 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.2 +0.0 +0.4 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.1 +0.0 +0.5 +0.2
no phage control BHIS_CaCl2 no phage control +0.0 +0.0 +0.1 +0.5 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.2 +0.1 +0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.3 +0.1 +0.4 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.2 -0.0 +0.5 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 +0.1 +0.4 +0.1
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EFB2_01438
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EFB2_01439
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EFB2_01441
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EFB2_01442
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