Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01428 and EFB2_01429 overlap by 4 nucleotidesEFB2_01429 and EFB2_01430 overlap by 4 nucleotidesEFB2_01430 and EFB2_01431 overlap by 4 nucleotidesEFB2_01431 and EFB2_01432 are separated by 106 nucleotides EFB2_01428: EFB2_01428 - Ethanolamine utilization protein EutQ, at 1,497,594 to 1,498,295 _01428 EFB2_01429: EFB2_01429 - hypothetical protein, at 1,498,292 to 1,499,095 _01429 EFB2_01430: EFB2_01430 - Ethanolamine utilization protein EutD, at 1,499,092 to 1,500,108 _01430 EFB2_01431: EFB2_01431 - Ethanolamine utilization protein EutM, at 1,500,105 to 1,500,440 _01431 EFB2_01432: EFB2_01432 - Ethanolamine utilization protein EutN, at 1,500,547 to 1,500,834 _01432
Group Condition EFB2_01428 EFB2_01429 EFB2_01430 EFB2_01431 EFB2_01432
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.5 +0.3 +0.3 -1.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 -0.1 -0.1 -0.8
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.5 -0.0 -0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.3 +0.1 -0.4 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.0 +0.1 -0.4 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.3 +0.1 -0.5 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.2 -0.1 +0.1 +0.2 -0.8
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.4 +0.0 +0.1 +0.2
mixed community no phage control BHIS no phage control with 14 member community -0.0 +0.3 +0.1 -0.2 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.3 +0.2 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 -0.2 -0.1 +0.5
no phage control BHIS no phage control +0.1 -0.6 +0.0 +0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.2 +0.3 +0.2 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.0 -0.3 +0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.2 +0.3 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 +0.2 +0.2 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -0.2 +0.2 -0.0 +0.3
no phage control BHIS no phage control -0.0 -0.3 +0.1 +0.2 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 +0.1 +0.1 +0.3 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 +0.3 +0.4 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 +0.3 +0.3 +0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 +0.0 +0.1 +0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.2 +0.1 +0.2 +0.5
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 +0.0 +0.1 +0.3 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.1 +0.2 +0.1 +0.5
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 +0.2 +0.2 +0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 +0.2 +0.1 +0.4 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.1 +0.3 +0.1 +0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.0 +0.3 +0.2 +0.7
no phage control BHIS_CaCl2 no phage control +0.0 -0.1 +0.8 +0.6 +0.6
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