Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01415 and EFB2_01416 are separated by 27 nucleotidesEFB2_01416 and EFB2_01417 are separated by 3 nucleotidesEFB2_01417 and EFB2_01418 are separated by 538 nucleotidesEFB2_01418 and EFB2_01419 are separated by 163 nucleotides EFB2_01415: EFB2_01415 - hypothetical protein, at 1,479,653 to 1,479,853 _01415 EFB2_01416: EFB2_01416 - Succinyl-diaminopimelate desuccinylase, at 1,479,881 to 1,481,008 _01416 EFB2_01417: EFB2_01417 - Protein YffB, at 1,481,012 to 1,481,368 _01417 EFB2_01418: EFB2_01418 - Multidrug efflux pump subunit AcrB, at 1,481,907 to 1,485,020 _01418 EFB2_01419: EFB2_01419 - Nitrate/nitrite sensor protein NarQ, at 1,485,184 to 1,486,884 _01419
Group Condition EFB2_01415 EFB2_01416 EFB2_01417 EFB2_01418 EFB2_01419
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.0 N.D. -0.0 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.6 N.D. -0.2 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.7 N.D. -0.1 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.3 N.D. -0.5 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 N.D. -0.5 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.6 N.D. +0.0 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.6 N.D. +0.1 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.9 N.D. +0.1 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 N.D. -0.1 -0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.6 N.D. -0.1 +0.2 -0.1
no phage control BHIS_CaCl2 no phage control -0.2 N.D. -0.4 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 N.D. -0.2 +0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.2 N.D. -0.2 +0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.6 N.D. +0.0 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 N.D. -0.2 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.5 N.D. +0.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 N.D. -0.4 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 N.D. -0.4 +0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.4 N.D. +0.2 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 N.D. -0.3 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 N.D. -0.4 -0.0 -0.1
no phage control BHIS no phage control +0.2 N.D. -0.4 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 N.D. -0.2 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 N.D. +0.2 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 N.D. +0.4 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.5 N.D. -0.1 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.9 N.D. -0.4 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 N.D. +0.4 -0.1 -0.1
no phage control BHIS no phage control +0.4 N.D. +0.1 +0.0 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.6 N.D. +0.2 +0.0 -0.1
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EFB2_01419
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