Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01402 and EFB2_01403 are separated by 105 nucleotidesEFB2_01403 and EFB2_01404 are separated by 20 nucleotidesEFB2_01404 and EFB2_01405 are separated by 212 nucleotidesEFB2_01405 and EFB2_01406 are separated by 98 nucleotides EFB2_01402: EFB2_01402 - DnaA regulatory inactivator Hda, at 1,467,628 to 1,468,374 _01402 EFB2_01403: EFB2_01403 - putative protein YfgD, at 1,468,480 to 1,468,839 _01403 EFB2_01404: EFB2_01404 - Beta-barrel assembly-enhancing protease, at 1,468,860 to 1,470,323 _01404 EFB2_01405: EFB2_01405 - Putative transport protein YhhT, at 1,470,536 to 1,471,597 _01405 EFB2_01406: EFB2_01406 - Peroxiredoxin Bcp, at 1,471,696 to 1,472,166 _01406
Group Condition EFB2_01402 EFB2_01403 EFB2_01404 EFB2_01405 EFB2_01406
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. -0.3 -0.1 -0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. -0.6 +0.0 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.3 +0.1 +0.1 -0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. -0.4 +0.1 +0.0 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -1.0 +0.2 +0.0 +0.4
mixed community no phage control BHIS no phage control with 14 member community N.D. -0.3 -0.0 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.3 +0.2 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. -0.4 -0.1 -0.0 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.3 +0.1 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.4 +0.1 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.5 +0.4 +0.0 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.3 +0.1 -0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. -0.4 -0.1 -0.0 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.2 +0.4 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. -0.3 +0.1 -0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 +0.3 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.2 +0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.1 +0.2 +0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.2 +0.2 -0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.2 +0.2 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.2 +0.1 -0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community N.D. +0.4 -0.1 -0.1 -0.0
no phage control BHIS_CaCl2 no phage control N.D. +0.5 -0.6 -0.4 +0.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.3 +0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.2 +0.1 +0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.1 +0.2 +0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.2 +0.2 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.4 +0.2 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.5 +0.2 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. +0.2 +0.1 -0.1 +0.4
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EFB2_01402
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EFB2_01406
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