Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01399 and EFB2_01400 are separated by 324 nucleotidesEFB2_01400 and EFB2_01401 are separated by 85 nucleotidesEFB2_01401 and EFB2_01402 are separated by 49 nucleotidesEFB2_01402 and EFB2_01403 are separated by 105 nucleotides EFB2_01399: EFB2_01399 - Phosphoribosylformylglycinamidine cyclo-ligase, at 1,464,215 to 1,465,252 _01399 EFB2_01400: EFB2_01400 - Uracil phosphoribosyltransferase, at 1,465,577 to 1,466,203 _01400 EFB2_01401: EFB2_01401 - Uracil permease, at 1,466,289 to 1,467,578 _01401 EFB2_01402: EFB2_01402 - DnaA regulatory inactivator Hda, at 1,467,628 to 1,468,374 _01402 EFB2_01403: EFB2_01403 - putative protein YfgD, at 1,468,480 to 1,468,839 _01403
Group Condition EFB2_01399 EFB2_01400 EFB2_01401 EFB2_01402 EFB2_01403
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -1.0 +0.0 N.D. -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.5 +0.0 N.D. -0.6
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.7 +0.0 N.D. -0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 -0.4 -0.1 N.D. -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.2 +0.1 N.D. -1.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 -0.4 +0.1 N.D. -0.4
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.7 +0.0 N.D. -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.1 -0.2 N.D. -0.5
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.9 +0.0 N.D. -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.3 -0.1 N.D. -0.3
no phage control BHIS no phage control -0.0 -0.6 +0.1 N.D. -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.4 -0.1 N.D. -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.3 -0.1 N.D. -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 -0.4 -0.0 N.D. -0.0
no phage control BHIS no phage control -0.0 -0.6 +0.2 N.D. -0.2
no phage control BHIS_CaCl2 no phage control -0.2 -0.5 -0.0 N.D. +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.5 +0.0 N.D. -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.7 -0.0 N.D. -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.5 -0.1 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.5 +0.0 N.D. +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.4 -0.0 N.D. -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.1 +0.1 N.D. -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.5 +0.0 N.D. +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 -0.2 N.D. +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.5 +0.1 N.D. +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.5 +0.1 N.D. +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.6 -0.0 N.D. +0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.3 -0.1 N.D. +0.4
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.4 +0.1 N.D. +0.4
no phage control BHIS_CaCl2 no phage control -0.1 +1.3 +0.1 N.D. +0.5
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EFB2_01399
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EFB2_01400
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EFB2_01402
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EFB2_01403
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