Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01394 and EFB2_01395 are separated by 181 nucleotidesEFB2_01395 and EFB2_01396 are separated by 38 nucleotidesEFB2_01396 and EFB2_01397 are separated by 4 nucleotidesEFB2_01397 and EFB2_01398 are separated by 171 nucleotides EFB2_01394: EFB2_01394 - hypothetical protein, at 1,457,177 to 1,457,329 _01394 EFB2_01395: EFB2_01395 - Cyclic di-GMP phosphodiesterase PdeF, at 1,457,511 to 1,459,754 _01395 EFB2_01396: EFB2_01396 - Exopolyphosphatase, at 1,459,793 to 1,461,334 _01396 EFB2_01397: EFB2_01397 - Polyphosphate kinase, at 1,461,339 to 1,463,405 _01397 EFB2_01398: EFB2_01398 - Phosphoribosylglycinamide formyltransferase, at 1,463,577 to 1,464,215 _01398
Group Condition EFB2_01394 EFB2_01395 EFB2_01396 EFB2_01397 EFB2_01398
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.0 -0.1 -1.1 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 +0.0 +0.1 -1.5 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.0 -0.0 -1.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.0 +0.1 -1.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.6 +0.2 +0.2 -1.0 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.2 +0.1 +0.1 -1.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.1 -0.0 -1.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 +0.1 -1.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.0 -0.0 -1.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 +0.1 -1.3 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 +0.0 -0.1 -1.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.1 +0.1 -1.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.0 +0.0 -1.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.0 -0.0 -1.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.1 -0.1 -1.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.1 +0.0 -1.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.1 -1.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.0 +0.1 -1.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 +0.1 +0.2 -0.9 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 +0.3 -1.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 +0.1 -1.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 -0.3 -0.8 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.1 +0.2 -0.8 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.1 +0.1 -1.0 +0.0
no phage control BHIS_CaCl2 no phage control -0.1 -0.1 +0.2 -0.9 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 +0.0 -0.1 -0.9 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.3 +0.1 +0.0 -0.9 -0.1
no phage control BHIS_CaCl2 no phage control +0.3 +0.1 +0.1 -1.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 +0.1 +0.2 -1.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 +0.2 -0.8 -0.0
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EFB2_01394
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