Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01383 and EFB2_01384 are separated by 68 nucleotidesEFB2_01384 and EFB2_01385 are separated by 161 nucleotidesEFB2_01385 and EFB2_01386 are separated by 68 nucleotidesEFB2_01386 and EFB2_01387 are separated by 294 nucleotides EFB2_01383: EFB2_01383 - hypothetical protein, at 1,439,402 to 1,447,453 _01383 EFB2_01384: EFB2_01384 - Exodeoxyribonuclease 7 large subunit, at 1,447,522 to 1,448,898 _01384 EFB2_01385: EFB2_01385 - Inosine-5'-monophosphate dehydrogenase, at 1,449,060 to 1,450,526 _01385 EFB2_01386: EFB2_01386 - GMP synthase [glutamine-hydrolyzing], at 1,450,595 to 1,452,172 _01386 EFB2_01387: EFB2_01387 - hypothetical protein, at 1,452,467 to 1,453,237 _01387
Group Condition EFB2_01383 EFB2_01384 EFB2_01385 EFB2_01386 EFB2_01387
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 -0.2 -3.2 N.D. -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.1 -3.3 N.D. -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.2 -3.3 N.D. +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.1 -3.2 N.D. -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.1 -3.3 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.1 -3.2 N.D. -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.0 -3.1 N.D. -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 -3.2 N.D. -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 -3.4 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.1 -3.3 N.D. +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 -0.0 -3.2 N.D. -0.0
mixed community no phage control BHIS no phage control with 14 member community -0.0 -0.2 -3.1 N.D. +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 -3.3 N.D. -0.0
mixed community no phage control BHIS no phage control with 14 member community +0.0 -0.1 -3.2 N.D. +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.1 -3.2 N.D. +0.1
mixed community no phage control BHIS no phage control with 14 member community -0.0 +0.1 -3.0 N.D. -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 -2.7 N.D. -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.0 -3.0 N.D. +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 -2.6 N.D. -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.1 -2.7 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 -0.1 -2.7 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 -2.5 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.0 -2.7 N.D. +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.0 -2.6 N.D. +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.0 -2.7 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.0 -2.4 N.D. -0.0
no phage control BHIS_CaCl2 no phage control +0.0 -0.1 -2.2 N.D. -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 -2.2 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.0 -2.2 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.0 -2.2 N.D. +0.1
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