Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01366 and EFB2_01367 are separated by 58 nucleotidesEFB2_01367 and EFB2_01368 are separated by 142 nucleotidesEFB2_01368 and EFB2_01369 are separated by 496 nucleotidesEFB2_01369 and EFB2_01370 are separated by 206 nucleotides EFB2_01366: EFB2_01366 - Protein IscX, at 1,415,178 to 1,415,378 _01366 EFB2_01367: EFB2_01367 - Peptidase B, at 1,415,437 to 1,416,720 _01367 EFB2_01368: EFB2_01368 - hypothetical protein, at 1,416,863 to 1,417,639 _01368 EFB2_01369: EFB2_01369 - 3-mercaptopyruvate sulfurtransferase, at 1,418,136 to 1,418,981 _01369 EFB2_01370: EFB2_01370 - Alpha-2-macroglobulin, at 1,419,188 to 1,424,149 _01370
Group Condition EFB2_01366 EFB2_01367 EFB2_01368 EFB2_01369 EFB2_01370
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.0 -0.1 -0.2 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.6 +0.0 -0.2 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.8 +0.0 -0.1 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.1 +0.1 +0.2 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.5 +0.1 -0.3 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.7 -0.0 +0.0 +0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.6 -0.1 +0.0 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 +0.0 -0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 -0.1 +0.0 -0.0 -0.1
no phage control BHIS_CaCl2 no phage control +0.6 -0.2 -0.7 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.3 +0.1 -0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.3 +0.2 +0.0 -0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 -0.0 -0.1 +0.1 -0.0
no phage control BHIS_CaCl2 no phage control -0.4 +0.2 +0.0 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.3 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.2 -0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.1 -0.2 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.3 -0.2 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 +0.2 -0.2 +0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 +0.2 +0.2 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 +0.2 +0.3 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 +0.1 +0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.4 +0.0 -0.0 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.6 +0.0 -0.0 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 +0.0 +0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 +0.2 +0.0 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.0 +0.2 +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.4 -0.0 +0.2 +0.1 -0.1
no phage control BHIS no phage control +0.6 +0.1 -0.1 +0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.6 +0.1 +0.0 +0.1 -0.1
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