Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01360 and EFB2_01361 are separated by 27 nucleotidesEFB2_01361 and EFB2_01362 are separated by 16 nucleotidesEFB2_01362 and EFB2_01363 are separated by 95 nucleotidesEFB2_01363 and EFB2_01364 are separated by 16 nucleotides EFB2_01360: EFB2_01360 - Cysteine desulfurase IscS, at 1,410,383 to 1,411,597 _01360 EFB2_01361: EFB2_01361 - Iron-sulfur cluster assembly scaffold protein IscU, at 1,411,625 to 1,412,011 _01361 EFB2_01362: EFB2_01362 - Iron-binding protein IscA, at 1,412,028 to 1,412,351 _01362 EFB2_01363: EFB2_01363 - Co-chaperone protein HscB, at 1,412,447 to 1,412,962 _01363 EFB2_01364: EFB2_01364 - Chaperone protein HscA, at 1,412,979 to 1,414,829 _01364
Group Condition EFB2_01360 EFB2_01361 EFB2_01362 EFB2_01363 EFB2_01364
no phage control BHIS no phage control N.D. N.D. -3.2 -3.2 -3.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -1.9 -3.1 -3.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -3.2 -3.3 -1.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -2.6 -2.1 -3.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. N.D. -2.4 -2.5 -3.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. N.D. -2.6 -2.6 -2.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -2.2 -2.4 -3.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -3.0 -2.4 -2.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -3.1 -1.8 -2.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -2.0 -2.2 -3.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -2.0 -2.4 -3.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -2.6 -2.6 -1.8
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. N.D. -2.9 -2.5 -1.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -2.8 -2.6 -1.5
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. N.D. -3.2 -2.2 -1.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -2.6 -2.6 -1.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -3.3 -1.5 -2.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -2.7 -2.6 -1.4
no phage control BHIS no phage control N.D. N.D. -1.8 -3.3 -1.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. N.D. -3.1 -2.4 -1.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -1.9 -2.5 -1.9
no phage control BHIS_CaCl2 no phage control N.D. N.D. -2.9 -1.9 -1.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -3.1 -1.6 -1.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.7 -2.7 -2.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.5 -3.2 -2.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -2.1 -2.6 -1.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -2.5 -2.6 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -2.1 -2.6 -0.9
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -2.2 -2.6 -0.8
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -2.6 -2.0 -0.9
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