Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01350 and EFB2_01351 are separated by 65 nucleotidesEFB2_01351 and EFB2_01352 are separated by 11 nucleotidesEFB2_01352 and EFB2_01353 are separated by 47 nucleotidesEFB2_01353 and EFB2_01354 are separated by 368 nucleotides EFB2_01350: EFB2_01350 - Ribose import permease protein RbsC, at 1,400,401 to 1,401,399 _01350 EFB2_01351: EFB2_01351 - L-threonine 3-dehydrogenase, at 1,401,465 to 1,402,526 _01351 EFB2_01352: EFB2_01352 - putative protein YphB, at 1,402,538 to 1,403,410 _01352 EFB2_01353: EFB2_01353 - Inner membrane protein YphA, at 1,403,458 to 1,403,880 _01353 EFB2_01354: EFB2_01354 - putative 3-phenylpropionic acid transporter, at 1,404,249 to 1,405,388 _01354
Group Condition EFB2_01350 EFB2_01351 EFB2_01352 EFB2_01353 EFB2_01354
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.0 -0.2 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.1 -0.0 +0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.1 +0.0 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 -0.1 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.0 +0.2 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 +0.0 +0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 -0.3 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 +0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.1 -0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 +0.1 +0.0 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 +0.0 -0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 -0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 -0.0 +0.2 +0.0
no phage control BHIS no phage control +0.2 -0.1 +0.0 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.2 +0.1 +0.0 -0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 -0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.0 +0.2 -0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.3 -0.0 -0.2 +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.2 +0.0 +0.2 -0.0 -0.2
mixed community no phage control BHIS no phage control with 14 member community +0.2 -0.0 +0.1 +0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 -0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 +0.1 +0.2 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.0 -0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.1 +0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.0 +0.1 +0.1 +0.0
no phage control BHIS_CaCl2 no phage control +0.3 +0.4 +0.1 -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.1 +0.1 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.2 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 +0.0 +0.2 +0.0 +0.2
no phage control BHIS no phage control +0.3 -0.0 +0.2 +0.1 -0.0
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