Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01315 and EFB2_01316 are separated by 47 nucleotidesEFB2_01316 and EFB2_01317 are separated by 304 nucleotidesEFB2_01317 and EFB2_01318 are separated by 55 nucleotidesEFB2_01318 and EFB2_01319 are separated by 102 nucleotides EFB2_01315: EFB2_01315 - putative tRNA/rRNA methyltransferase YfiF, at 1,358,989 to 1,360,026 _01315 EFB2_01316: EFB2_01316 - Uracil-DNA glycosylase, at 1,360,074 to 1,360,763 _01316 EFB2_01317: EFB2_01317 - Autonomous glycyl radical cofactor, at 1,361,068 to 1,361,451 _01317 EFB2_01318: EFB2_01318 - Cysteine/O-acetylserine efflux protein, at 1,361,507 to 1,362,094 _01318 EFB2_01319: EFB2_01319 - HTH-type transcriptional activator CmpR, at 1,362,197 to 1,363,078 _01319
Group Condition EFB2_01315 EFB2_01316 EFB2_01317 EFB2_01318 EFB2_01319
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 -0.1 -0.6 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 -0.6 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.0 -0.4 -0.0 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.2 +0.1 -0.2 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.1 -0.3 -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.3 +0.0 -0.0 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 -0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.3 -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 +0.1 +0.1 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.0 -0.2 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -0.1 +0.1 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 -0.4 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 -0.3 +0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.3 +0.0 +0.3 +0.1 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.2 +0.1 +0.2 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 +0.1 -0.3 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 +0.0 +0.3 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 +0.2 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 -0.2 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 +0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.1 +0.2 +0.1 -0.1
no phage control BHIS_CaCl2 no phage control -0.3 +0.4 -0.1 +0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.1 +0.2 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.4 +0.1 -0.1 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.1 +0.1 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.0 +0.3 +0.2 -0.0
no phage control BHIS no phage control +0.2 +0.1 +0.2 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.0 +0.2 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.2 +0.4 +0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.2 +0.4 +0.1 +0.0
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EFB2_01315
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