Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01286 and EFB2_01287 are separated by 76 nucleotidesEFB2_01287 and EFB2_01288 are separated by 15 nucleotidesEFB2_01288 and EFB2_01289 overlap by 11 nucleotidesEFB2_01289 and EFB2_01290 are separated by 146 nucleotides EFB2_01286: EFB2_01286 - 50S ribosomal protein L19, at 1,330,364 to 1,330,711 _01286 EFB2_01287: EFB2_01287 - Peptidoglycan-associated lipoprotein, at 1,330,788 to 1,331,270 _01287 EFB2_01288: EFB2_01288 - Diguanylate cyclase DgcN, at 1,331,286 to 1,332,512 _01288 EFB2_01289: EFB2_01289 - hypothetical protein, at 1,332,502 to 1,333,020 _01289 EFB2_01290: EFB2_01290 - hypothetical protein, at 1,333,167 to 1,333,529 _01290
Group Condition EFB2_01286 EFB2_01287 EFB2_01288 EFB2_01289 EFB2_01290
no phage control BHIS_CaCl2 no phage control N.D. +0.2 +0.1 -1.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 -0.1 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 +0.1 +0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. -0.1 -0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.1 +0.0 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. -0.1 -0.1 +0.1 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. -0.2 +0.0 +0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 +0.2 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 -0.1 +0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.2 +0.2 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.0 +0.2 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.1 +0.0 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 -0.0 +0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.2 -0.1 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.1 +0.2 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.0 -0.1 +0.3 -0.1
no phage control BHIS_CaCl2 no phage control N.D. +0.0 +0.1 +0.2 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.1 +0.2 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.2 -0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.1 +0.1 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.0 -0.1 +0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.0 +0.1 +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community N.D. +0.1 +0.1 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. +0.1 -0.0 +0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.0 -0.0 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.1 +0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.3 -0.0 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.0 +0.1 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 +0.2 +0.2 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. +0.0 +0.1 +0.2 +0.2
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EFB2_01286
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EFB2_01290
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