Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01246 and EFB2_01247 are separated by 123 nucleotidesEFB2_01247 and EFB2_01248 are separated by 191 nucleotidesEFB2_01248 and EFB2_01249 are separated by 56 nucleotidesEFB2_01249 and EFB2_01250 overlap by 8 nucleotides EFB2_01246: EFB2_01246 - Inner membrane protein YgaZ, at 1,295,124 to 1,295,861 _01246 EFB2_01247: EFB2_01247 - putative transporter, at 1,295,985 to 1,297,169 _01247 EFB2_01248: EFB2_01248 - Glycine betaine/proline betaine-binding periplasmic protein, at 1,297,361 to 1,298,353 _01248 EFB2_01249: EFB2_01249 - Glycine betaine/proline betaine transport system permease protein ProW, at 1,298,410 to 1,299,474 _01249 EFB2_01250: EFB2_01250 - Glycine betaine/proline betaine transport system ATP-binding protein ProV, at 1,299,467 to 1,300,108 _01250
Group Condition EFB2_01246 EFB2_01247 EFB2_01248 EFB2_01249 EFB2_01250
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.0 -0.0 -0.2 -0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -0.0 -0.2 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.0 -0.1 -0.3 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.0 -0.1 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.0 -0.2 -0.1 +0.0
no phage control BHIS no phage control -0.2 -0.1 +0.0 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.0 -0.1 -0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.0 +0.0 +0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.1 +0.0 -0.2 +0.0
no phage control BHIS_CaCl2 no phage control -0.1 -0.0 -0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.0 +0.1 +0.0 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.0 +0.2 -0.3 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 +0.2 +0.0 -0.0 -0.2
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.1 -0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.0 -0.0 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 -0.0 +0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.2 -0.0 -0.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.2 +0.0 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 +0.0 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.2 +0.0 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.1 -0.2 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 -0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.0 -0.0 -0.1 +0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 +0.1 -0.1 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 +0.1 -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.0 +0.1 -0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 +0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 +0.2 -0.1 +0.2
no phage control BHIS_CaCl2 no phage control +0.3 -0.0 +0.5 +0.3 -0.2
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EFB2_01246
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EFB2_01247
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EFB2_01250
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