Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01154 and EFB2_01155 are separated by 73 nucleotidesEFB2_01155 and EFB2_01156 are separated by 263 nucleotidesEFB2_01156 and EFB2_01157 are separated by 124 nucleotidesEFB2_01157 and EFB2_01158 are separated by 251 nucleotides EFB2_01154: EFB2_01154 - Sulfite reductase [NADPH] hemoprotein beta-component, at 1,211,765 to 1,213,477 _01154 EFB2_01155: EFB2_01155 - Phosphoadenosine phosphosulfate reductase, at 1,213,551 to 1,214,285 _01155 EFB2_01156: EFB2_01156 - Toxic protein HokE, at 1,214,549 to 1,214,701 _01156 EFB2_01157: EFB2_01157 - hypothetical protein, at 1,214,826 to 1,215,863 _01157 EFB2_01158: EFB2_01158 - Sulfate adenylyltransferase subunit 2, at 1,216,115 to 1,217,023 _01158
Group Condition EFB2_01154 EFB2_01155 EFB2_01156 EFB2_01157 EFB2_01158
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.1 -0.4 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.3 -0.3 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.0 -0.2 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.0 -0.4 -0.0 +0.0
no phage control BHIS_CaCl2 no phage control -0.1 -0.0 -0.2 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.1 -0.4 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 -0.4 +0.1 -0.0 +0.0
mixed community no phage control BHIS no phage control with 14 member community -0.0 -0.2 -0.2 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.1 -0.2 -0.1 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.1 -0.2 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.1 -0.3 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.2 -0.1 -0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 -0.2 +0.1 +0.1
no phage control BHIS no phage control +0.1 +0.0 -0.2 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.2 +0.2 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.0 -0.3 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.1 +0.1 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.3 -0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.1 +0.1 +0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.0 -0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.0 +0.1 +0.1 +0.2
no phage control BHIS no phage control +0.0 +0.2 -0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.0 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 +0.2 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.3 -0.2 -0.0 +0.1
no phage control BHIS_CaCl2 no phage control +0.2 -0.3 -0.1 +0.2 +0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.2 +0.2 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 +0.0 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.2 +0.1 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 +0.2 +0.1 +0.1
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