Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01130 and EFB2_01131 are separated by 230 nucleotidesEFB2_01131 and EFB2_01132 are separated by 56 nucleotidesEFB2_01132 and EFB2_01133 are separated by 47 nucleotidesEFB2_01133 and EFB2_01134 are separated by 95 nucleotides EFB2_01130: EFB2_01130 - Glucarate dehydratase, at 1,181,500 to 1,182,840 _01130 EFB2_01131: EFB2_01131 - Signal transduction histidine-protein kinase BarA, at 1,183,071 to 1,185,827 _01131 EFB2_01132: EFB2_01132 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 1,185,884 to 1,187,185 _01132 EFB2_01133: EFB2_01133 - GTP pyrophosphokinase, at 1,187,233 to 1,189,467 _01133 EFB2_01134: EFB2_01134 - Nucleoside triphosphate pyrophosphohydrolase, at 1,189,563 to 1,190,354 _01134
Group Condition EFB2_01130 EFB2_01131 EFB2_01132 EFB2_01133 EFB2_01134
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.4 -0.4 -5.9 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.4 -0.3 -5.6 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 -0.3 -5.8 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.2 -0.3 -5.8 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.3 -0.3 -5.7 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.2 -0.2 -5.7 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.3 -0.4 -5.6 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.3 -0.3 -5.4 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.4 -0.2 -5.6 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.2 -0.3 -5.7 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.2 -0.1 -5.8 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.3 -0.4 -5.6 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.2 -0.3 -5.6 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.3 -0.4 -5.4 +0.1
no phage control BHIS_CaCl2 no phage control +0.1 -0.1 -0.3 -5.8 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.2 -0.4 -5.6 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.4 -0.3 -5.5 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.4 -0.2 -5.5 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.4 -0.3 -5.6 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.4 -0.2 -5.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.2 -0.2 -5.7 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.4 -0.3 -5.5 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.2 -0.3 -5.4 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.3 -0.4 -5.5 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.3 -0.3 -5.5 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.1 -0.2 -5.7 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.2 -5.6 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.3 -0.3 -5.5 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.3 -0.3 -5.5 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.2 -0.3 -5.6 +0.1
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