Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01113 and EFB2_01114 are separated by 1 nucleotidesEFB2_01114 and EFB2_01115 are separated by 108 nucleotidesEFB2_01115 and EFB2_01116 are separated by 32 nucleotidesEFB2_01116 and EFB2_01117 are separated by 546 nucleotides EFB2_01113: EFB2_01113 - L-fucose mutarotase, at 1,161,526 to 1,161,948 _01113 EFB2_01114: EFB2_01114 - L-fuculokinase, at 1,161,950 to 1,163,368 _01114 EFB2_01115: EFB2_01115 - L-fucose isomerase, at 1,163,477 to 1,165,252 _01115 EFB2_01116: EFB2_01116 - L-fucose-proton symporter, at 1,165,285 to 1,166,601 _01116 EFB2_01117: EFB2_01117 - L-fuculose phosphate aldolase, at 1,167,148 to 1,167,795 _01117
Group Condition EFB2_01113 EFB2_01114 EFB2_01115 EFB2_01116 EFB2_01117
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.0 -0.1 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.1 -0.2 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 -0.1 -0.2 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.1 +0.0 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 +0.0 +0.0 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 +0.1 -0.0 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.0 +0.2 -0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 +0.0 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.2 -0.0 +0.1 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.0 +0.0 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.2 -0.0 -0.0 +0.0
mixed community no phage control BHIS no phage control with 14 member community -0.1 +0.0 -0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 +0.1 -0.0 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.1 +0.0 -0.0 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.1 +0.2 +0.0 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.0 +0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.0 -0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 +0.1 -0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.2 -0.0 +0.1 +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.1 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.1 -0.1 +0.0 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 -0.1 +0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.1 +0.1 -0.0 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.0 -0.0 +0.0 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.0 +0.0 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.1 +0.1 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 +0.1 +0.0 +0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 +0.0 +0.2 +0.1 +0.2
no phage control BHIS no phage control +0.2 +0.1 +0.1 +0.2 +0.2
no phage control BHIS_CaCl2 no phage control +0.8 -0.0 +0.2 +0.2 +0.3
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