Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01110 and EFB2_01111 overlap by 8 nucleotidesEFB2_01111 and EFB2_01112 are separated by 43 nucleotidesEFB2_01112 and EFB2_01113 are separated by 57 nucleotidesEFB2_01113 and EFB2_01114 are separated by 1 nucleotides EFB2_01110: EFB2_01110 - hypothetical protein, at 1,159,205 to 1,159,600 _01110 EFB2_01111: EFB2_01111 - Ribosomal RNA large subunit methyltransferase M, at 1,159,593 to 1,160,693 _01111 EFB2_01112: EFB2_01112 - putative HTH-type transcriptional regulator YdjF, at 1,160,737 to 1,161,468 _01112 EFB2_01113: EFB2_01113 - L-fucose mutarotase, at 1,161,526 to 1,161,948 _01113 EFB2_01114: EFB2_01114 - L-fuculokinase, at 1,161,950 to 1,163,368 _01114
Group Condition EFB2_01110 EFB2_01111 EFB2_01112 EFB2_01113 EFB2_01114
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.5 +0.0 -0.2 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 -0.1 -0.1 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.4 +0.0 -0.0 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.5 +0.1 -0.0 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.0 -0.2 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 +0.1 -0.0 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.3 -0.0 -0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 -0.2 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.0 -0.0 -0.4 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.1 +0.0 -0.2 +0.0
no phage control BHIS_CaCl2 no phage control -0.3 +0.1 -0.0 +0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.0 -0.1 +0.1 -0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.0 +0.2 -0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.2 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.0 +0.0 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.3 +0.2 +0.0 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.4 +0.1 +0.0 +0.3 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.1 -0.1 -0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -0.1 -0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.3 +0.1 -0.0 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.0 +0.1 +0.0 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.0 -0.2 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.2 -0.1 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.1 +0.1 -0.0 +0.0
no phage control BHIS no phage control +0.2 -0.2 -0.0 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.0 -0.1 +0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.0 -0.1 +0.1 +0.0
no phage control BHIS no phage control +0.0 +0.0 -0.0 +0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.4 -0.0 +0.1 +0.1 -0.0
no phage control BHIS_CaCl2 no phage control +0.8 +0.3 +0.1 +0.8 -0.0
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EFB2_01110
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EFB2_01111
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EFB2_01114
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