Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01107 and EFB2_01108 are separated by 191 nucleotidesEFB2_01108 and EFB2_01109 are separated by 350 nucleotidesEFB2_01109 and EFB2_01110 are separated by 18 nucleotidesEFB2_01110 and EFB2_01111 overlap by 8 nucleotides EFB2_01107: EFB2_01107 - Cysteine desulfurase CsdA, at 1,156,294 to 1,157,499 _01107 EFB2_01108: EFB2_01108 - putative lipoprotein YgdR, at 1,157,691 to 1,157,918 _01108 EFB2_01109: EFB2_01109 - Glycine cleavage system transcriptional activator, at 1,158,269 to 1,159,186 _01109 EFB2_01110: EFB2_01110 - hypothetical protein, at 1,159,205 to 1,159,600 _01110 EFB2_01111: EFB2_01111 - Ribosomal RNA large subunit methyltransferase M, at 1,159,593 to 1,160,693 _01111
Group Condition EFB2_01107 EFB2_01108 EFB2_01109 EFB2_01110 EFB2_01111
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.5 +0.0 -0.5 -0.5 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.0 -0.5 -0.4 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.2 -0.2 -0.6 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.0 -0.8 -0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.1 -0.9 +0.0 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.2 -0.7 +0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.1 -0.8 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.1 -0.5 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 +0.2 -0.4 -0.5 +0.0
no phage control BHIS_CaCl2 no phage control -0.2 -0.0 -0.5 -0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.0 -0.6 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 -0.5 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.3 +0.0 -0.4 -0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.1 -0.5 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.1 -0.6 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.0 -0.7 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 +0.1 -0.4 -0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.0 -0.5 -0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.7 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.1 -0.5 -0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.0 -0.6 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.2 -0.5 -0.4 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.7 +0.1 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.2 +0.2 -0.4 -0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 -0.7 +0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.7 +0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.3 +0.0 -0.5 +0.4 -0.0
no phage control BHIS no phage control -0.0 +0.1 -0.5 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.3 -0.7 +0.2 +0.0
no phage control BHIS_CaCl2 no phage control -0.1 +0.1 -0.5 +0.8 +0.3
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EFB2_01107
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EFB2_01108
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EFB2_01111
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