Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01095 and EFB2_01096 overlap by 41 nucleotidesEFB2_01096 and EFB2_01097 are separated by 12 nucleotidesEFB2_01097 and EFB2_01098 overlap by 4 nucleotidesEFB2_01098 and EFB2_01099 are separated by 17 nucleotides EFB2_01095: EFB2_01095 - Outer membrane protein A, at 1,147,063 to 1,147,950 _01095 EFB2_01096: EFB2_01096 - hypothetical protein, at 1,147,910 to 1,148,551 _01096 EFB2_01097: EFB2_01097 - hypothetical protein, at 1,148,564 to 1,149,229 _01097 EFB2_01098: EFB2_01098 - hypothetical protein, at 1,149,226 to 1,150,563 _01098 EFB2_01099: EFB2_01099 - hypothetical protein, at 1,150,581 to 1,152,119 _01099
Group Condition EFB2_01095 EFB2_01096 EFB2_01097 EFB2_01098 EFB2_01099
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.2 -0.1 -0.3 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 -0.3 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 +0.2 -0.3 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 -0.2 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.0 -0.3 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.2 -0.1 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.1 -0.3 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.3 +0.1 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.4 -0.0 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 -0.2 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 -0.2 +0.0 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.3 +0.2 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 -0.1 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.1 -0.1 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.4 -0.0 -0.0 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.1 +0.0 -0.3 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.1 -0.2 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.1 -0.1 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.0 -0.2 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.2 +0.0 -0.1 -0.0
no phage control BHIS no phage control +0.2 -0.1 +0.1 -0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.2 -0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.1 -0.2 +0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community -0.2 +0.2 +0.1 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 +0.1 -0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 +0.1 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.0 +0.3 -0.1 +0.0
no phage control BHIS_CaCl2 no phage control -0.1 -0.0 -0.2 +0.4 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 -0.1 +0.1 +0.1
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EFB2_01095
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EFB2_01096
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EFB2_01097		 remove
EFB2_01098
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EFB2_01099
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