Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01065 and EFB2_01066 are separated by 81 nucleotidesEFB2_01066 and EFB2_01067 are separated by 231 nucleotidesEFB2_01067 and EFB2_01068 are separated by 257 nucleotidesEFB2_01068 and EFB2_01069 are separated by 31 nucleotides EFB2_01065: EFB2_01065 - RecBCD enzyme subunit RecD, at 1,107,594 to 1,109,420 _01065 EFB2_01066: EFB2_01066 - Amino-acid acetyltransferase, at 1,109,502 to 1,110,833 _01066 EFB2_01067: EFB2_01067 - N-acetylmuramoyl-L-alanine amidase AmiC, at 1,111,065 to 1,112,318 _01067 EFB2_01068: EFB2_01068 - Transcription antiterminator LicT, at 1,112,576 to 1,113,400 _01068 EFB2_01069: EFB2_01069 - PTS system maltose-specific EIICB component, at 1,113,432 to 1,115,012 _01069
Group Condition EFB2_01065 EFB2_01066 EFB2_01067 EFB2_01068 EFB2_01069
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.5 -0.2 -0.1 -0.8 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.6 -0.0 -0.0 -0.7 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 -0.1 +0.2 -1.0 +0.1
no phage control BHIS no phage control -0.4 +0.0 -0.1 -0.6 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.4 +0.0 -0.1 -0.7 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.1 -0.1 -0.5 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.4 -0.1 +0.1 -0.4 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -0.2 +0.1 -0.3 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 -0.1 +0.2 -0.5 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.0 +0.1 -0.4 -0.1
no phage control BHIS no phage control -0.4 -0.1 +0.1 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 +0.0 +0.2 -0.6 +0.0
no phage control BHIS_CaCl2 no phage control -0.5 -0.2 -0.2 +0.3 -0.0
no phage control BHIS_CaCl2 no phage control -0.5 -0.1 -0.1 +0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 -0.1 +0.3 -0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.0 +0.1 -0.4 +0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.5 -0.1 -0.0 +0.5 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 -0.1 +0.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.4 -0.2 +0.1 +0.2 +0.0
no phage control BHIS no phage control -0.4 -0.1 -0.1 +0.4 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.0 -0.1 +0.4 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.6 -0.0 +0.1 +0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.3 -0.1 -0.0 +0.7 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 -0.1 +0.2 +0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.1 +0.2 +0.6 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 +0.0 +0.1 +0.6 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 -0.1 +0.1 +0.6 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.2 -0.1 -0.0 +0.6 +0.0
mixed community no phage control BHIS no phage control with 14 member community -0.3 +0.1 -0.0 +0.6 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 +0.0 +0.2 +0.6 +0.1
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