Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_01061 and EFB2_01062 are separated by 12 nucleotidesEFB2_01062 and EFB2_01063 are separated by 175 nucleotidesEFB2_01063 and EFB2_01064 overlap by 8 nucleotidesEFB2_01064 and EFB2_01065 overlap by 1 nucleotides EFB2_01061: EFB2_01061 - hypothetical protein, at 1,097,291 to 1,097,614 _01061 EFB2_01062: EFB2_01062 - RecBCD enzyme subunit RecC, at 1,097,627 to 1,100,995 _01062 EFB2_01063: EFB2_01063 - Protease 3, at 1,101,171 to 1,104,059 _01063 EFB2_01064: EFB2_01064 - RecBCD enzyme subunit RecB, at 1,104,052 to 1,107,594 _01064 EFB2_01065: EFB2_01065 - RecBCD enzyme subunit RecD, at 1,107,594 to 1,109,420 _01065
Group Condition EFB2_01061 EFB2_01062 EFB2_01063 EFB2_01064 EFB2_01065
no phage control BHIS no phage control -0.6 -2.7 -0.0 -2.2 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 -2.8 -0.0 -2.6 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.4 -2.6 +0.0 -2.5 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 -2.7 +0.0 -2.5 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.5 -2.5 -0.1 -2.3 -0.4
no phage control BHIS_CaCl2 no phage control -0.1 -2.5 -0.0 -2.5 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 -2.7 -0.1 -2.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 -2.2 +0.0 -2.5 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -2.6 -0.1 -2.5 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.2 -2.6 +0.1 -2.4 -0.4
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 -2.6 -0.0 -2.3 -0.4
mixed community no phage control BHIS no phage control with 14 member community -0.2 -2.4 +0.0 -2.6 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -2.4 +0.0 -2.6 -0.2
no phage control BHIS no phage control -0.0 -2.7 +0.0 -2.4 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -2.7 +0.0 -2.7 -0.4
no phage control BHIS no phage control -0.3 -2.4 +0.0 -2.4 -0.4
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.3 -2.3 -0.0 -2.4 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -2.4 -0.0 -2.5 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -2.6 +0.0 -2.3 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -2.5 -0.1 -2.3 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -2.4 +0.0 -2.5 -0.4
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -2.6 -0.0 -2.6 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -2.6 -0.1 -2.2 -0.3
no phage control BHIS_CaCl2 no phage control +0.1 -2.6 -0.0 -2.2 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -2.5 +0.1 -2.4 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -2.5 +0.0 -2.3 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -2.4 +0.0 -2.8 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -2.4 +0.1 -2.3 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -2.3 -0.0 -2.5 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 -2.5 +0.0 -2.6 -0.2
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