Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00997 and EFB2_00998 are separated by 23 nucleotidesEFB2_00998 and EFB2_00999 are separated by 117 nucleotidesEFB2_00999 and EFB2_01000 are separated by 165 nucleotidesEFB2_01000 and EFB2_01001 are separated by 44 nucleotides EFB2_00997: EFB2_00997 - Aminomethyltransferase, at 1,022,179 to 1,023,273 _00997 EFB2_00998: EFB2_00998 - Glycine cleavage system H protein, at 1,023,297 to 1,023,686 _00998 EFB2_00999: EFB2_00999 - Glycine dehydrogenase (decarboxylating), at 1,023,804 to 1,026,677 _00999 EFB2_01000: EFB2_01000 - 6-phospho-beta-glucosidase BglA, at 1,026,843 to 1,028,276 _01000 EFB2_01001: EFB2_01001 - hypothetical protein, at 1,028,321 to 1,028,632 _01001
Group Condition EFB2_00997 EFB2_00998 EFB2_00999 EFB2_01000 EFB2_01001
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 +0.0 +0.0 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.2 -0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 +0.1 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.3 +0.1 -0.0 -0.2
no phage control BHIS no phage control +0.1 -0.1 -0.0 -0.1 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.2 +0.1 +0.0 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.1 +0.1 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.3 +0.1 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.2 +0.0 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 +0.1 +0.1 +0.1 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.2 +0.1 +0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 -0.0 +0.1 -0.2
no phage control BHIS_CaCl2 no phage control +0.2 +0.5 -0.2 -0.0 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.2 -0.0 -0.1 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -0.1 +0.1 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.1 -0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 +0.1 -0.1 -0.3
mixed community no phage control BHIS no phage control with 14 member community -0.0 +0.1 +0.1 +0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.3 +0.1 +0.0 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.1 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.3 -0.0 +0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 +0.2 +0.1 +0.0 -0.2
no phage control BHIS_CaCl2 no phage control -0.1 +0.2 +0.1 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -0.0 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.0 +0.0 -0.0 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 +0.0 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.4 +0.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.2 +0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 +0.2 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 +0.3 +0.1 +0.0 +0.2
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EFB2_00997
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EFB2_00998
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EFB2_01001
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