Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00984 and EFB2_00985 are separated by 157 nucleotidesEFB2_00985 and EFB2_00986 overlap by 4 nucleotidesEFB2_00986 and EFB2_00987 are separated by 202 nucleotidesEFB2_00987 and EFB2_00988 are separated by 140 nucleotides EFB2_00984: EFB2_00984 - 26 kDa periplasmic immunogenic protein, at 1,009,113 to 1,009,853 _00984 EFB2_00985: EFB2_00985 - HTH-type transcriptional regulator HdfR, at 1,010,011 to 1,010,907 _00985 EFB2_00986: EFB2_00986 - Methylmalonyl-CoA mutase, at 1,010,904 to 1,011,998 _00986 EFB2_00987: EFB2_00987 - HTH-type transcriptional regulator ArgP, at 1,012,201 to 1,013,094 _00987 EFB2_00988: EFB2_00988 - hypothetical protein, at 1,013,235 to 1,013,465 _00988
Group Condition EFB2_00984 EFB2_00985 EFB2_00986 EFB2_00987 EFB2_00988
no phage control BHIS_CaCl2 no phage control +0.6 -0.1 +0.1 -1.9 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.1 +0.0 -0.2 -0.7
no phage control BHIS_CaCl2 no phage control +0.1 -0.1 -0.1 -0.3 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 -0.1 -0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.0 -0.1 -0.3 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.0 -0.0 -0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.0 +0.0 -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.0 -0.1 -0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 -0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.0 +0.0 -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.0 +0.0 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.1 -0.0 -0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community -0.1 +0.1 +0.0 -0.0 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 +0.0 -0.3 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.0 +0.1 -0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.0 -0.0 -0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.0 -0.0 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.0 +0.0 -0.4 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 +0.1 +0.0 -0.2 -0.2
no phage control BHIS no phage control -0.2 +0.0 +0.1 +0.1 -0.1
no phage control BHIS_CaCl2 no phage control -0.1 +0.0 +0.0 -0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.0 +0.1 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 -0.1 -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.2 -0.0 +0.0 -0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 +0.0 -0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.1 +0.1 -0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.1 +0.0 +0.1 -0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.0 -0.0 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.0 -0.0 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.0 +0.1 +0.2 +0.1
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