Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00868 and EFB2_00869 are separated by 408 nucleotidesEFB2_00869 and EFB2_00870 are separated by 84 nucleotidesEFB2_00870 and EFB2_00871 overlap by 4 nucleotidesEFB2_00871 and EFB2_00872 are separated by 46 nucleotides EFB2_00868: EFB2_00868 - hypothetical protein, at 895,595 to 895,699 _00868 EFB2_00869: EFB2_00869 - hypothetical protein, at 896,108 to 896,950 _00869 EFB2_00870: EFB2_00870 - hypothetical protein, at 897,035 to 897,457 _00870 EFB2_00871: EFB2_00871 - Cytoskeleton-binding toxin CbtA, at 897,454 to 897,831 _00871 EFB2_00872: EFB2_00872 - Cytoskeleton bundling-enhancing antitoxin CbeA, at 897,878 to 898,252 _00872
Group Condition EFB2_00868 EFB2_00869 EFB2_00870 EFB2_00871 EFB2_00872
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.2 -0.0 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 -0.1 -0.1 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 -0.3 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 -0.1 -0.1 +0.3 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 +0.0 -0.3 -0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.3 -0.4 -0.0 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.0 +0.2 -0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.0 -0.2 +0.0 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.2 -0.5 +0.2 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.0 -0.3 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 -0.0 -0.3 -0.0 -0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.2 -0.2 -0.2 +0.1 +0.2
mixed community no phage control BHIS no phage control with 14 member community -0.2 +0.2 -0.2 +0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 +0.0 +0.3 -0.0 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.0 -0.3 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.2 -0.2 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 -0.0 -0.2 +0.3 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 -0.2 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.2 -0.2 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 -0.1 -0.3 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.0 -0.3 +0.1 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.2 +0.1 +0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.1 +0.1 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 -0.4 +0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 -0.0 +0.3 +0.0 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.3 +0.1 +0.1 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 -0.0 +0.4 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 +0.1 +0.5 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.0 +0.0 +0.3 +0.4
no phage control BHIS_CaCl2 no phage control +1.1 +0.0 -0.4 -0.3 +0.2
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