Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00858 and EFB2_00859 are separated by 52 nucleotidesEFB2_00859 and EFB2_00860 are separated by 102 nucleotidesEFB2_00860 and EFB2_00861 are separated by 188 nucleotidesEFB2_00861 and EFB2_00862 are separated by 161 nucleotides EFB2_00858: EFB2_00858 - hypothetical protein, at 879,464 to 880,699 _00858 EFB2_00859: EFB2_00859 - hypothetical protein, at 880,752 to 884,552 _00859 EFB2_00860: EFB2_00860 - hypothetical protein, at 884,655 to 885,500 _00860 EFB2_00861: EFB2_00861 - hypothetical protein, at 885,689 to 886,684 _00861 EFB2_00862: EFB2_00862 - hypothetical protein, at 886,846 to 888,084 _00862
Group Condition EFB2_00858 EFB2_00859 EFB2_00860 EFB2_00861 EFB2_00862
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 -0.4 -1.0 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.2 -0.3 -0.2 -0.1
no phage control BHIS_CaCl2 no phage control +0.3 +0.4 +1.1 -1.5 -1.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -0.0 -0.5 +0.0 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.1 -0.5 -0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.2 -0.3 -0.3 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.2 -0.5 -0.2 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 -0.6 +0.3 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.2 -0.4 +0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.3 -0.4 +0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.3 -0.0 -0.1 -0.3 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.4 -0.1 +0.1
no phage control BHIS no phage control +0.1 +0.0 -0.4 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.2 +0.3 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.2 -0.0 -0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.2 +0.4 -0.3 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.2 -0.2 +0.1 +0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 -0.2 +0.4 -0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.1 -0.2 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 +0.3 -0.3 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.3 -0.2 +0.4 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.3 -0.2 -0.2 +0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.3 +0.4 -0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.2 +0.3 -0.1 -0.1
no phage control BHIS_CaCl2 no phage control +0.2 -0.2 +0.4 +0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.2 +0.8 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.3 +0.7 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.1 +0.8 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.5 -0.1 +0.4 +0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.3 +0.3 +0.1 +0.4
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EFB2_00858
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EFB2_00859
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EFB2_00861
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EFB2_00862
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