Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00854 and EFB2_00855 are separated by 1050 nucleotidesEFB2_00855 and EFB2_00856 overlap by 4 nucleotidesEFB2_00856 and EFB2_00857 are separated by 11 nucleotidesEFB2_00857 and EFB2_00858 are separated by 15 nucleotides EFB2_00854: EFB2_00854 - Type II secretion system protein M, at 876,010 to 876,546 _00854 EFB2_00855: EFB2_00855 - Polysialic acid transport protein KpsM, at 877,597 to 878,373 _00855 EFB2_00856: EFB2_00856 - Polysialic acid transport ATP-binding protein KpsT, at 878,370 to 879,041 _00856 EFB2_00857: EFB2_00857 - Glycerol-3-phosphate cytidylyltransferase, at 879,053 to 879,448 _00857 EFB2_00858: EFB2_00858 - hypothetical protein, at 879,464 to 880,699 _00858
Group Condition EFB2_00854 EFB2_00855 EFB2_00856 EFB2_00857 EFB2_00858
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.4 -0.3 -1.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.4 -0.7 -0.5 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.4 -0.3 -0.9 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.4 -1.1 -0.4 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.4 -0.3 -0.4 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.4 -0.6 -0.4 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.1 -0.1 -1.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.4 -0.4 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -0.4 -0.4 +0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 -0.5 -0.7 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -0.3 -0.5 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.5 -0.1 -0.7 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.4 -0.8 +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.4 -0.3 +0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.3 -0.2 -0.4 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.3 -1.0 +0.3 +0.2
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.4 -0.7 -0.0 +0.3
mixed community no phage control BHIS no phage control with 14 member community -0.2 -0.4 -0.4 +0.3 -0.1
no phage control BHIS_CaCl2 no phage control +0.1 +0.2 -0.5 -0.8 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.4 -0.1 -0.5 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.5 -0.3 -0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.4 -0.3 +0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.4 -0.4 +0.4 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.4 -0.1 +0.4 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.4 -0.3 +0.4 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.5 -0.1 +0.4 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.3 -0.4 +0.5 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 -0.3 +0.9 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.2 +0.0 +0.7 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.1 +0.5 +0.4 +0.3
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