Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00835 and EFB2_00836 overlap by 1 nucleotidesEFB2_00836 and EFB2_00837 are separated by 10 nucleotidesEFB2_00837 and EFB2_00838 are separated by 4 nucleotidesEFB2_00838 and EFB2_00839 are separated by 21 nucleotides EFB2_00835: EFB2_00835 - putative FAD-linked oxidoreductase, at 851,148 to 852,647 _00835 EFB2_00836: EFB2_00836 - hypothetical protein, at 852,647 to 853,699 _00836 EFB2_00837: EFB2_00837 - Lactate utilization protein A, at 853,710 to 854,933 _00837 EFB2_00838: EFB2_00838 - hypothetical protein, at 854,938 to 855,342 _00838 EFB2_00839: EFB2_00839 - Malate synthase G, at 855,364 to 857,535 _00839
Group Condition EFB2_00835 EFB2_00836 EFB2_00837 EFB2_00838 EFB2_00839
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 -0.1 -0.2 +0.0
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.1 -0.0 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.0 -0.1 -0.0 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -0.2 -0.0 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.0 -0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 -0.1 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.0 -0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 -0.2 -0.1 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 -0.0 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.2 -0.2 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.0 -0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 -0.2 +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.2 -0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.2 +0.0 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.1 -0.1 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.0 -0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.1 -0.0 +0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 -0.0 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.0 -0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.0 -0.0 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.0 +0.0 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.0 -0.0 -0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.1 -0.2 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.1 -0.0 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.1 -0.1 +0.2 +0.1
no phage control BHIS_CaCl2 no phage control -0.1 -0.0 -0.1 +0.3 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 +0.0 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.0 -0.1 +0.3 +0.1
no phage control BHIS_CaCl2 no phage control +0.0 -0.4 +0.1 +0.5 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 +0.0 +0.1 +0.1
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EFB2_00835
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EFB2_00836
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EFB2_00838
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EFB2_00839
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