Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_00801 and EFB2_00802 are separated by 139 nucleotidesEFB2_00802 and EFB2_00803 are separated by 251 nucleotidesEFB2_00803 and EFB2_00804 are separated by 6 nucleotidesEFB2_00804 and EFB2_00805 are separated by 38 nucleotides EFB2_00801: EFB2_00801 - Inner membrane protein YghB, at 818,038 to 818,697 _00801 EFB2_00802: EFB2_00802 - Cystathionine beta-lyase MetC, at 818,837 to 820,024 _00802 EFB2_00803: EFB2_00803 - Biopolymer transport protein ExbB, at 820,276 to 821,010 _00803 EFB2_00804: EFB2_00804 - Biopolymer transport protein ExbD, at 821,017 to 821,442 _00804 EFB2_00805: EFB2_00805 - putative oxidoreductase YghA, at 821,481 to 822,365 _00805
Group Condition EFB2_00801 EFB2_00802 EFB2_00803 EFB2_00804 EFB2_00805
no phage control BHIS_CaCl2 no phage control -3.1 +0.2 +0.2 +0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 -0.0 -0.9 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 -0.1 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.0 +0.2 -0.3 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.0 +0.2 -0.3 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.0 +0.2 -0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 -0.1 +0.1 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.0 +0.1 -0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 +0.2 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 +0.0 +0.3 -0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.0 +0.3 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.1 -0.1 +0.4 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.1 +0.4 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 +0.3 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.2 -0.1 +0.2 -0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.1 +0.2 -0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 +0.3 -0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.0 +0.2 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 +0.0 +0.3 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.1 +0.2 -0.1 +0.1
no phage control BHIS no phage control +0.0 -0.1 -0.0 +0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 +0.2 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 -0.1 +0.2 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.2 +0.3 +0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.0 +0.1 +0.3 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.0 -0.0 +0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.1 +0.1 +0.3 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.0 +0.2 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.2 -0.1 +0.2 +0.4 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.0 +0.3 +0.4 +0.1
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EFB2_00801
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